CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14106
KRH74010

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33120.1	KRH14106	AT5G35750.1	18642946
AT1G33120.1	KRH74010	AT5G35750.1	18642946
AT1G33140.1	KRH14106	AT5G35750.1	18642946
AT1G33140.1	KRH74010	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53659	Soybean	nucleus	100.0	100.0
KRH53658	Soybean	cytosol	100.0	100.0
KRH64280	Soybean	nucleus	95.31	95.31
VIT_16s0098g00730.t01	Wine grape	cytosol	88.54	88.08
VIT_09s0002g01620.t01	Wine grape	cytosol	88.54	88.08
Solyc08g014550.2.1	Tomato	cytosol, extracellular, nucleus	88.02	87.11
Bra039999.1-P	Field mustard	cytosol	88.02	87.11
CDX87811	Canola	cytosol, extracellular	88.02	87.11
CDX93796	Canola	cytosol	88.02	87.11
CDY32946	Canola	cytosol, extracellular	88.02	87.11
PGSC0003DMT400064920	Potato	cytosol	87.5	86.6
GSMUA_Achr2P00380_001	Banana	cytosol	44.27	85.86
AT1G33140.1	Thale cress	cytosol	86.46	85.57
Solyc12g096700.1.1	Tomato	nucleus	86.46	85.57
AT1G33120.1	Thale cress	cytosol	86.46	85.57
CDY14882	Canola	cytosol	85.94	85.05
Bra035980.1-P	Field mustard	cytosol	85.94	85.05
CDX96888	Canola	cytosol	85.94	85.05
GSMUA_Achr5P20390_001	Banana	cytosol	44.27	85.0
Solyc06g073310.2.1	Tomato	nucleus, plastid	85.42	84.54
CDY43615	Canola	cytosol	73.96	84.52
PGSC0003DMT400075242	Potato	cytosol	81.25	84.32
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	43.75	84.0
PGSC0003DMT400069184	Potato	cytosol	80.73	83.78
CDX99541	Canola	cytosol	84.9	83.59
CDX86863	Canola	cytosol	84.9	83.59
CDY25258	Canola	cytosol, plasma membrane	84.38	83.51
Bra033171.1-P	Field mustard	cytosol	84.38	83.51
Bra037917.1-P	Field mustard	cytosol	84.38	83.51
AT4G10450.1	Thale cress	cytosol	83.85	82.99
CDX94253	Canola	cytosol	83.85	82.99
Os09t0485900-01	Rice	cytosol	79.69	80.53
OQU84143	Sorghum	cytosol	59.38	80.28
TraesCS3B01G007200.1	Wheat	cytosol, nucleus	78.12	79.37
KRH64273	Soybean	endoplasmic reticulum, nucleus	77.08	79.14
TraesCS3B01G011900.1	Wheat	cytosol	77.6	78.84
TraesCS3A01G007300.1	Wheat	cytosol	77.6	78.84
TraesCS3B01G006500.1	Wheat	cytosol	77.6	78.84
TraesCS3B01G011300.1	Wheat	cytosol	77.6	78.84
TraesCS3D01G003800.1	Wheat	cytosol	77.6	78.84
TraesCS7A01G020200.1	Wheat	cytosol	77.6	78.84
EER89049	Sorghum	cytosol	77.6	78.42
TraesCS3D01G003200.1	Wheat	cytosol	77.08	78.31
TraesCS4A01G472200.1	Wheat	cytosol	77.08	78.31
HORVU7Hr1G002060.1	Barley	cytosol	77.08	78.31
Zm00001d035902_P001	Maize	cytosol	77.08	77.89
Zm00001d035901_P001	Maize	plasma membrane, plastid	77.08	77.89
Zm00001d045577_P003	Maize	cytosol	76.56	77.37
Zm00001d045578_P001	Maize	plastid	76.56	77.37
Zm00001d054084_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	76.04	76.84
HORVU7Hr1G043940.1	Barley	cytosol	32.29	68.13
KRH30764	Soybean	cytosol	32.81	67.74
HORVU0Hr1G006020.2	Barley	cytosol, plastid	77.08	67.58
HORVU0Hr1G006040.1	Barley	cytosol	18.23	66.04
HORVU2Hr1G058720.1	Barley	cytosol	31.25	65.93
Solyc06g034380.1.1	Tomato	cytosol	43.75	63.64
HORVU3Hr1G001140.5	Barley	plastid	77.08	63.25
Solyc12g017290.1.1	Tomato	cytosol	41.67	62.02
TraesCS7D01G016500.2	Wheat	nucleus	77.6	56.23

Protein Annotations

EntrezGene:100810611	EntrezGene:100811498	MapMan:17.1.2.1.8	Gene3D:3.90.930.12	EMBL:ACUP02003480	EMBL:BT097818
UniProt:C6TJH2	EnsemblPlantsGene:GLYMA_06G138400	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0022625	InterPro:IPR036789
EnsemblPlants:KRH53656	ProteinID:KRH53656	ProteinID:KRH53656.1	ProteinID:KRH53658.1	ProteinID:KRH53659.1	PFAM:PF00347
PIRSF:PIRSF002162	ScanProsite:PS00700	PANTHER:PTHR11655	PANTHER:PTHR11655:SF23	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS2
InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	SUPFAM:SSF56053	UniParc:UPI0001B1668B	:	:

Description

hypothetical protein

Coordinates

chr6:+:11302176..11303321

Molecular Weight (calculated)

21686.4 Da

IEP (calculated)

10.049

GRAVY (calculated)

-0.318

Length

192 amino acids

Sequence
(BLAST)

001: MKTILSSETM NIPDGVSIKV HAKVIEVEGP RGKLVRDFHH LNLDFQLITD DGGKRKLKID SWFGSRKTSA AIRTALSHVE NLITGVTKGY RYKMRFVYAH
101: FPINASIGNN SKSIEIRNFL GEKKVRKVDM LEGVSVVRSE KVKDELVLDG NDIELVSRSC ALINQKCHVK NKDIRKFLDG IYVSEKGTIL EE

Best Arabidopsis Sequence Match ( AT1G33120.1 )
(BLAST)

001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE

Arabidopsis Description

RPL9C60S ribosomal protein L9-1 [Source:UniProtKB/Swiss-Prot;Acc:P49209]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.