Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G46740.1 | CDY25541 | AT1G63900.1 | 23118188 |
| AT3G46740.1 | CDY34384 | AT1G63900.1 | 23118188 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82997 | Canola | cytosol | 52.95 | 99.36 |
| CDX86093 | Canola | cytosol | 51.84 | 97.28 |
| CDX99099 | Canola | cytosol, plastid | 51.84 | 81.7 |
| Bra033806.1-P | Field mustard | plastid | 52.43 | 75.62 |
| CDX81332 | Canola | mitochondrion | 21.86 | 74.42 |
| AT3G46740.1 | Thale cress | plastid | 50.38 | 72.13 |
| VIT_06s0004g05150.t01 | Wine grape | plastid | 47.22 | 68.44 |
| HORVU4Hr1G022900.2 | Barley | mitochondrion | 23.23 | 68.34 |
| KRH10219 | Soybean | plastid | 45.69 | 67.38 |
| KRH23106 | Soybean | endoplasmic reticulum | 45.86 | 67.12 |
| Solyc06g076360.2.1 | Tomato | plastid | 45.94 | 66.26 |
| TraesCS4D01G119300.1 | Wheat | cytosol | 33.82 | 65.56 |
| PGSC0003DMT400078190 | Potato | plastid | 45.77 | 63.96 |
| CDX78609 | Canola | extracellular | 8.03 | 62.67 |
| CDX70592 | Canola | cytosol | 4.44 | 61.9 |
| CDY33023 | Canola | plastid | 40.91 | 60.4 |
| CDX80294 | Canola | plastid | 41.25 | 59.7 |
| TraesCS4D01G209900.1 | Wheat | plastid | 38.6 | 55.94 |
| HORVU4Hr1G060190.1 | Barley | plastid | 38.68 | 55.86 |
| TraesCS4B01G209200.1 | Wheat | plastid, unclear | 38.6 | 55.8 |
| TraesCS4A01G095300.1 | Wheat | golgi, plastid | 38.51 | 55.75 |
| TraesCS4A01G194000.1 | Wheat | plastid | 34.76 | 53.69 |
| EER95112 | Sorghum | plastid | 38.43 | 52.94 |
| Zm00001d028586_P001 | Maize | plastid | 38.43 | 52.82 |
| Zm00001d047828_P001 | Maize | plasma membrane | 38.17 | 52.4 |
| KXG36538 | Sorghum | nucleus | 34.76 | 51.2 |
| CDY55302 | Canola | cytosol, peroxisome | 5.81 | 26.56 |
| CDX92514 | Canola | cytosol | 7.6 | 22.88 |
| CDX87938 | Canola | cytosol | 6.66 | 21.85 |
| CDY58968 | Canola | nucleus, plastid | 10.59 | 16.96 |
| GSMUA_Achr9P03850_001 | Banana | nucleus, peroxisome, plastid | 2.65 | 13.3 |
| CDX92515 | Canola | nucleus, plastid | 5.04 | 12.34 |
Protein Annotations
| Gene3D:2.40.160.50 | MapMan:23.1.2.1 | Gene3D:3.10.20.310 | Gene3D:3.40.50.300 | Gene3D:3.80.10.10 | GO:A0A078BUG6 |
| InterPro:Bac_surfAg_D15 | EnsemblPlants:CDX68401 | ProteinID:CDX68401 | ProteinID:CDX68401.1 | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0015450 | GO:GO:0016020 | GO:GO:0019867 | GO:GO:0043531 | EnsemblPlantsGene:GSBRNA2T00125783001 |
| InterPro:IAP75 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:NB-ARC | InterPro:P-loop_NTPase | PFAM:PF00931 |
| PFAM:PF01103 | PANTHER:PTHR12815 | PANTHER:PTHR12815:SF18 | InterPro:RX-like_CC | SUPFAM:SSF52058 | SUPFAM:SSF52540 |
| TIGRFAMs:TIGR00992 | UniParc:UPI0004EDC59D | SEG:seg | : | : | : |
Description
BnaC01g24790D
Coordinates
chrLK031788:-:776949..781996
Molecular Weight (calculated)
133149.0 Da
IEP (calculated)
7.813
GRAVY (calculated)
-0.377
Length
1171 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVSIRPGGVY TKAQLQKELE TLATCGMFEK VDLEGKTKPD GTLGVTISFA ESTWQSADRF RCINVGLMVQ SKPIEMDADM TDKEKLEYYR SLEKDYKRRM
0101: DRARPCLLPA PVYGEVMQML RDQGKVSARL LQKIRDRVQK WYQDEGYACA QVVNFGNLNT KEVVCEVVEG DITQLVIQFQ DKLGNVVEGN TQVPIVRREL
0201: PKQLRQGYVF NIEAGRQALR NINSLGLFSN IEVNPRQDEK NEGGIIVEIK LKELEQKSAE VSTEWSIVPG PGGAPTLASF QPGGSVTFEH RNIQGLNRSL
0301: MGSVTTSNFL NPQDDLSFKL DYVHPYLDGV YNPRNRTFKT SCFNSRKLSP VFTGGPGVDE VPPIWVDRAG VKANITENFT RQSKFTYGLV MEEITTRDES
0401: SHIAANGQRL LPSGGISADG PPTTLSGTGI DRMAFLQANI TRDNTKFVNG AVVGERNVFQ VDQGLGIGSK FPFFNRHQFS LTRFIQLQQV EEGAGKPPPP
0501: VLVLHGHYGG CVGDLPGYEA FVLGGPYSVR GYNMGELGAA RNTLELGAEI RVPVKNTHVY AFAEHGNDLG SSKDVKGNPT AVYRRMGQGS SYGVGVKLGL
0601: VRAEYAVDHN NGTGALFFRF GERLTTKETN NILFGDLSIR FEMVDAITGF IVGKMGDYLI KEASMLMTVK DDLEELKTEL TCIHCYLKDV EAREREDEVS
0701: KEWTKMVLDI AYDVEDVLDT YFLKFKERSQ RRGDDSRSLK RRILDITRKS ETYGVGRFKE PGGDMTTSSR RYIISIFGMG GLGKTALARK LYNLGDLYHL
0801: GDVKRRFEYH RAWTYVSQDY NTRDMLLRII RSLGVASGEE LERIKMFTEE EELEAYLHDL LDGRSRTRGR ALPCNHGGSR VIITTRIKAV AEGVDGRVHV
0901: HKLRFLTNGS KMRWFTSCYK EWHEVCASVW RFLKDDSIHI STIFDLSFNE LHHELRLCFL YLSVFPEDYE IDVEKLIQLL VAERFIQEDG EMMMEDVARH
1001: YMEELIDRSL HHSSTTCRRE VVHHLMDNNY LCDRRVNKRM RSFLFIGEQK RMLGSYVKTT NLKLKLLRVL NLRGLLFDCE GYIPFMSLRD VICELIHLRY
1101: LGVADTGLRH LPSLISNLQF LQTLDASGNR FEGMTDLRKL TWSKLQHKSL KNLRDLEIYD SGYVELRRVQ Y
0101: DRARPCLLPA PVYGEVMQML RDQGKVSARL LQKIRDRVQK WYQDEGYACA QVVNFGNLNT KEVVCEVVEG DITQLVIQFQ DKLGNVVEGN TQVPIVRREL
0201: PKQLRQGYVF NIEAGRQALR NINSLGLFSN IEVNPRQDEK NEGGIIVEIK LKELEQKSAE VSTEWSIVPG PGGAPTLASF QPGGSVTFEH RNIQGLNRSL
0301: MGSVTTSNFL NPQDDLSFKL DYVHPYLDGV YNPRNRTFKT SCFNSRKLSP VFTGGPGVDE VPPIWVDRAG VKANITENFT RQSKFTYGLV MEEITTRDES
0401: SHIAANGQRL LPSGGISADG PPTTLSGTGI DRMAFLQANI TRDNTKFVNG AVVGERNVFQ VDQGLGIGSK FPFFNRHQFS LTRFIQLQQV EEGAGKPPPP
0501: VLVLHGHYGG CVGDLPGYEA FVLGGPYSVR GYNMGELGAA RNTLELGAEI RVPVKNTHVY AFAEHGNDLG SSKDVKGNPT AVYRRMGQGS SYGVGVKLGL
0601: VRAEYAVDHN NGTGALFFRF GERLTTKETN NILFGDLSIR FEMVDAITGF IVGKMGDYLI KEASMLMTVK DDLEELKTEL TCIHCYLKDV EAREREDEVS
0701: KEWTKMVLDI AYDVEDVLDT YFLKFKERSQ RRGDDSRSLK RRILDITRKS ETYGVGRFKE PGGDMTTSSR RYIISIFGMG GLGKTALARK LYNLGDLYHL
0801: GDVKRRFEYH RAWTYVSQDY NTRDMLLRII RSLGVASGEE LERIKMFTEE EELEAYLHDL LDGRSRTRGR ALPCNHGGSR VIITTRIKAV AEGVDGRVHV
0901: HKLRFLTNGS KMRWFTSCYK EWHEVCASVW RFLKDDSIHI STIFDLSFNE LHHELRLCFL YLSVFPEDYE IDVEKLIQLL VAERFIQEDG EMMMEDVARH
1001: YMEELIDRSL HHSSTTCRRE VVHHLMDNNY LCDRRVNKRM RSFLFIGEQK RMLGSYVKTT NLKLKLLRVL NLRGLLFDCE GYIPFMSLRD VICELIHLRY
1101: LGVADTGLRH LPSLISNLQF LQTLDASGNR FEGMTDLRKL TWSKLQHKSL KNLRDLEIYD SGYVELRRVQ Y
001: MAAFSVNGQL IPTATSSTAS TSLSSRRKFL SPSSSRLPRI STQSPRVPSI KCSKSLPNRD TETSSKDSLL KNLAKPLAVA SVSSAASFFL FRISNLPSVL
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY
Arabidopsis Description
TOC75-3Protein TOC75-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STE8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.