CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH31972
KRH71471

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46740.1	KRH31972	AT1G63900.1	23118188
AT3G46740.1	KRH71471	AT1G63900.1	23118188

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23106	Soybean	endoplasmic reticulum	91.31	90.62
CDX86093	Canola	cytosol	68.39	87.02
CDX82997	Canola	cytosol	67.25	85.58
CDX99099	Canola	cytosol, plastid	76.07	81.29
VIT_06s0004g05150.t01	Wine grape	plastid	77.2	75.87
Solyc06g076360.2.1	Tomato	plastid	77.58	75.86
Bra018197.1-P	Field mustard	plastid	78.46	75.7
Bra033806.1-P	Field mustard	plastid	76.83	75.12
AT3G46740.1	Thale cress	plastid	77.2	74.94
PGSC0003DMT400078190	Potato	plastid	77.83	73.75
HORVU4Hr1G022900.2	Barley	mitochondrion	34.89	69.6
CDX81332	Canola	mitochondrion	29.72	68.6
CDY33023	Canola	plastid	65.11	65.2
Bra002581.1-P	Field mustard	plastid	64.99	65.07
TraesCS4D01G119300.1	Wheat	cytosol	49.24	64.74
CDX80294	Canola	plastid	65.24	64.03
TraesCS4D01G209900.1	Wheat	plastid	64.99	63.86
TraesCS4B01G209200.1	Wheat	plastid, unclear	64.99	63.7
TraesCS4A01G095300.1	Wheat	golgi, plastid	64.74	63.54
HORVU4Hr1G060190.1	Barley	plastid	64.86	63.5
AT1G35860.1	Thale cress	nucleus	31.86	63.41
AT4G09080.2	Thale cress	golgi	31.86	62.16
Zm00001d028586_P001	Maize	plastid	64.11	59.74
EER95112	Sorghum	plastid	63.85	59.65
Zm00001d047828_P001	Maize	plasma membrane	63.73	59.32
TraesCS4A01G194000.1	Wheat	plastid	54.91	57.52
KXG36538	Sorghum	nucleus	54.79	54.72
Bra018196.1-P	Field mustard	plastid	76.83	50.79
CDX68401	Canola	cytosol	67.38	45.69
Os12t0115950-00	Rice	nucleus, plasma membrane	12.22	39.92
KRH19528	Soybean	plastid	3.27	30.59
KRH22619	Soybean	cytosol	10.2	22.5
KRH26702	Soybean	cytosol	9.95	21.94
KRH32153	Soybean	plastid	8.82	19.34
KRH10192	Soybean	plastid	15.49	18.17
KRH23145	Soybean	cytosol, nucleus, plastid	15.49	17.96
GSMUA_Achr9P03850_001	Banana	nucleus, peroxisome, plastid	4.03	13.73

Protein Annotations

EntrezGene:100776079	Gene3D:2.40.160.50	MapMan:23.1.2.1	Gene3D:3.10.20.310	EMBL:ACUP02009126	InterPro:Bac_surfAg_D15
EnsemblPlantsGene:GLYMA_15G035600	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015450	GO:GO:0016020	GO:GO:0019867
GO:GO:0071806	UniProt:I1MDC4	InterPro:IAP75	EnsemblPlants:KRH10219	ProteinID:KRH10219	ProteinID:KRH10219.1
PFAM:PF01103	PANTHER:PTHR12815	PANTHER:PTHR12815:SF18	TIGRFAMs:TIGR00992	UniParc:UPI000233B18C	SEG:seg

Description

hypothetical protein

Coordinates

chr15:+:2830678..2835534

Molecular Weight (calculated)

86817.1 Da

IEP (calculated)

7.450

GRAVY (calculated)

-0.368

Length

794 amino acids

Sequence
(BLAST)

001: MASFAAPNNL GSAVLPSRPP PVKCTLFPSC NNNNNHSLSN PSPSHPPPLF KAIAISSAAS ILMHCTPLSP FLPNPLAKLG GGGGNTGGGG GGGDGWFGGG
101: GGGNGGFWSR MFAAVADESQ SQEWDSHGLP ANIVVQLNKM SGFKKYKVSD ISFFDRNRKM KVGTEDSFFE MVSLRPGGVY TKGQLQKELE TLATSGMFEK
201: VDLEGKTNPD GSIGVTISFS ESTWQSADGF RCINVGLMQQ TKPVEMDADM TDKERLEYYL SQEREYKRRI ERARPCLLPR YVHNEILDML KRHGMVSARL
301: LQRIRDRVQK WYHDEGYACA QVVNFGNLNT KEVVCEVVEG DITQLDIQFQ DKLGNVVEGN TQVPVIQREL PRQLRPGYTF NIEAGKQALR NVNSLALFSN
401: IEVNPRPDET NEGGIVVEIK LKELEQKSAE VSTEWSIVPG RGGHPTLASL QPGGTVSFEH RNLQGLNRSI NGSITTSNFL NPQDDLAFKL EYVHPYLDGV
501: YYSRNRTLRV SCFNSRKLSP VFTGGPGVDE VPPIWVDRTG VKANITENFT RQSKFTYGLV MEEITTRDES SHICANGQRV LPSGGISADG PPTTLSGTGI
601: DHMAFLQANI TRDNTRFVNG TVVGDRNMFQ VDQGLGIGSQ FPFFNRHQLT LTRFIQLMAV EEGAGKPPPP VLVLHGHYGG CVGDLPSYDA FTLGGPYSVR
701: GYNMGEIGAA RNILELAAEL RIPVKGTHVY AFTEHGNDLG SSKGVKGNPT EVYRRMGHGS SYGLGVKLGL VRAEYAVDHN SGTGALFFRF GERF

Best Arabidopsis Sequence Match ( AT3G46740.1 )
(BLAST)

001: MAAFSVNGQL IPTATSSTAS TSLSSRRKFL SPSSSRLPRI STQSPRVPSI KCSKSLPNRD TETSSKDSLL KNLAKPLAVA SVSSAASFFL FRISNLPSVL
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY

Arabidopsis Description

TOC75-3Protein TOC75-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STE8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.