Factsheet for TraesCS4D01G209900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G138100.2
TraesCS2B01G162000.1
TraesCS2D01G141100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46740.1	TraesCS2A01G138100.2	AT1G63900.1	23118188
AT3G46740.1	TraesCS2B01G162000.1	AT1G63900.1	23118188
AT3G46740.1	TraesCS2D01G141100.1	AT1G63900.1	23118188

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G095300.1	Wheat	golgi, plastid	99.26	99.13
TraesCS4B01G209200.1	Wheat	plastid, unclear	99.26	99.01
HORVU4Hr1G060190.1	Barley	plastid	99.26	98.89
Os03t0271200-01	Rice	plastid	89.6	88.62
EER95112	Sorghum	plastid	84.9	80.71
Zm00001d047828_P001	Maize	plasma membrane	84.65	80.19
Zm00001d028586_P001	Maize	plastid	83.91	79.58
GSMUA_Achr9P03840_001	Banana	cytosol	30.45	78.59
GSMUA_Achr10P...	Banana	cytosol	52.35	76.49
TraesCS4D01G119300.1	Wheat	cytosol	55.94	74.83
CDX86093	Canola	cytosol	56.56	73.24
CDX82997	Canola	cytosol	55.94	72.44
GSMUA_Achr9P03830_001	Banana	cytosol	12.13	69.5
CDX99099	Canola	cytosol, plastid	63.37	68.91
GSMUA_Achr6P15190_001	Banana	mitochondrion	59.41	65.84
KRH10219	Soybean	plastid	63.86	64.99
VIT_06s0004g05150.t01	Wine grape	plastid	64.98	64.98
KRH23106	Soybean	endoplasmic reticulum	63.49	64.12
Bra033806.1-P	Field mustard	plastid	64.36	64.04
Bra018197.1-P	Field mustard	plastid	64.6	63.43
Solyc06g076360.2.1	Tomato	plastid	63.61	63.3
AT3G46740.1	Thale cress	plastid	63.99	63.2
PGSC0003DMT400078190	Potato	plastid	63.86	61.58
Bra002581.1-P	Field mustard	plastid	57.92	59.02
CDY33023	Canola	plastid	57.8	58.89
AT1G35860.1	Thale cress	nucleus	28.71	58.15
CDX80294	Canola	plastid	58.04	57.97
CDX81332	Canola	mitochondrion	24.5	57.56
CDX70592	Canola	cytosol	5.94	57.14
CDX78609	Canola	extracellular	10.52	56.67
AT4G09080.2	Thale cress	golgi	27.85	55.28
Bra006282.1-P	Field mustard	plasma membrane	12.62	44.16
Bra018196.1-P	Field mustard	plastid	63.49	42.71
CDX68401	Canola	cytosol	55.94	38.6
TraesCS1D01G330700.3	Wheat	cytosol, nucleus, plastid	10.27	22.93
TraesCS6D01G153700.1	Wheat	golgi	15.1	18.51
GSMUA_Achr9P03850_001	Banana	nucleus, peroxisome, plastid	3.71	12.88

Protein Annotations

EnsemblPlants:TraesCS4D01G209900.1	EnsemblPlantsGene:TraesCS4D01G209900	Gene3D:2.40.160.50	Gene3D:3.10.20.310	GO:GO:0005575	GO:GO:0016020
GO:GO:0019867	InterPro:Bac_surfAg_D15	PANTHER:PTHR12815	PANTHER:PTHR12815:SF14	PFAM:PF01103	SEG:seg
MapMan:23.1.2.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:361036847..361041529

Molecular Weight (calculated)

86881.0 Da

IEP (calculated)

8.146

GRAVY (calculated)

-0.327

Length

808 amino acids

Sequence
(BLAST)

001: MALTSQSLFF TPSPAGPSRR GRGRPVTMSA AASHNSQPRN NPFAVSSSAP KSESKTSKTD LALGSAIAAA ASGALLLAFS GGFGGGPKGP LGGGGGWGGG
101: GGGAGGGGGG GFWSRIFSAG AANADEKSSS DWDPHGLPAN ITVPLSKLSG LKRYKLSELK FFDRAAPGGG GATDAGPEDS FFEMVTLQPG GVYTKSQLLK
201: ELETLVSCGM FERVDLEGKA KPDGTLGLTV SFTESVWSAA KQFKCINVGL MAQSGQADFD QDMTEREKMD YLRKQERDYQ QRVRGAMPCI LPESVRGEVL
301: AMMKKQEKVS ARMLQKIRDH VQKWYHNEGF VCAQVVNFGN LNTSEVVCEV VEGDITKVEY QFQDKLGNFV EGNTQIPIID RELPQQLRPG HIFNIGAGKQ
401: ALKNINSLAL FSNIEVNPRP DETKEGGIVV EIKLKELEPK SAEVSTEWSI VPGRQGRPTL ASIQPGGTVS FEHRNIYGLN RSIVGSVTSS NLLNPQDDLS
501: FKLEYVHPYL DGVDDRNKNR TFKTSCFNTR KLSPVFVAGP NMDEAPPVWV DRVGFKANIT ESFTRQSKFT YGLVVEEITT RDETNSICTH GSRAMPSGGL
601: SMDGPPTTLS GTGVDRMAFL QANITRDNTE FVNGAVIGDR CIFQLDQGLG IGSKSPLFNR HQLTLTKFIN LNNQEKGVGK PLPAVLVLHG HYAGCVGDLP
701: SYDAFTLGGP YSVRGYGMGE LGASRNVLEV AGEVRIPVKN TYVYGFAEHG TDLGSSKDVK GNPTEFFRRV GHGSSYGVGV KLGLVRGEYI VDHNTGAGTV
801: FFRFGERF

Best Arabidopsis Sequence Match ( AT3G46740.1 )
(BLAST)

001: MAAFSVNGQL IPTATSSTAS TSLSSRRKFL SPSSSRLPRI STQSPRVPSI KCSKSLPNRD TETSSKDSLL KNLAKPLAVA SVSSAASFFL FRISNLPSVL
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY

Arabidopsis Description

TOC75-3Protein TOC75-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STE8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.