CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78609	Canola	extracellular	63.1	35.33
GSMUA_Achr9P03840_001	Banana	cytosol	50.0	13.42
HORVU4Hr1G022900.2	Barley	mitochondrion	48.81	10.3
GSMUA_Achr10P...	Banana	cytosol	60.71	9.22
CDX86093	Canola	cytosol	64.29	8.65
CDX82997	Canola	cytosol	60.71	8.17
TraesCS4D01G119300.1	Wheat	cytosol	55.95	7.78
CDX99099	Canola	cytosol, plastid	64.29	7.27
GSMUA_Achr6P15190_001	Banana	mitochondrion	59.52	6.86
TraesCS4A01G194000.1	Wheat	plastid	55.95	6.2
TraesCS4D01G209900.1	Wheat	plastid	57.14	5.94
TraesCS4A01G095300.1	Wheat	golgi, plastid	57.14	5.93
TraesCS4B01G209200.1	Wheat	plastid, unclear	57.14	5.93
HORVU4Hr1G060190.1	Barley	plastid	57.14	5.92
EER95112	Sorghum	plastid	57.14	5.65
Zm00001d028586_P001	Maize	plastid	57.14	5.63
Zm00001d047828_P001	Maize	plasma membrane	57.14	5.63
CDX80294	Canola	plastid	51.19	5.32
CDY33023	Canola	plastid	48.81	5.17
CDX81332	Canola	mitochondrion	20.24	4.94
KXG36538	Sorghum	nucleus	46.43	4.91
CDX68401	Canola	cytosol	61.9	4.44
CDX92514	Canola	cytosol	17.86	3.86
GSMUA_Achr9P03830_001	Banana	cytosol	5.95	3.55
CDY58968	Canola	nucleus, plastid	20.24	2.33
CDX92515	Canola	nucleus, plastid	13.1	2.3
CDX87938	Canola	cytosol	5.95	1.4
CDY55302	Canola	cytosol, peroxisome	3.57	1.17
Os12t0115950-00	Rice	nucleus, plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:CDX70592	EnsemblPlantsGene:GSBRNA2T00140436001	Gene3D:3.10.20.310	PANTHER:PTHR12815	PANTHER:PTHR12815:SF18	ProteinID:CDX70592
ProteinID:CDX70592.1	UniParc:UPI0004EECFF2	MapMan:35.1	:	:	:

Description

BnaC03g06760D

Coordinates

chrLK031791:-:1145434..1145967

Molecular Weight (calculated)

9749.9 Da

IEP (calculated)

6.248

GRAVY (calculated)

-0.183

Length

84 amino acids

Sequence
(BLAST)

1: MELPKRLRQG YVFNIEAGKQ ALTNIKPLRL FSNIEVNPRP DEKNEGAIVV EIILKEFEHK SVDVSTVWNI VHGLVEELPH WYLV

Best Arabidopsis Sequence Match ( AT3G46740.1 )
(BLAST)

001: MAAFSVNGQL IPTATSSTAS TSLSSRRKFL SPSSSRLPRI STQSPRVPSI KCSKSLPNRD TETSSKDSLL KNLAKPLAVA SVSSAASFFL FRISNLPSVL
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY

Arabidopsis Description

TOC75-3Protein TOC75-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STE8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.