Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G46740.1 | CDY25541 | AT1G63900.1 | 23118188 |
| AT3G46740.1 | CDY34384 | AT1G63900.1 | 23118188 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86093 | Canola | cytosol | 96.96 | 96.96 |
| CDX99099 | Canola | cytosol, plastid | 96.96 | 81.43 |
| Bra033806.1-P | Field mustard | plastid | 98.72 | 75.86 |
| CDX81332 | Canola | mitochondrion | 41.03 | 74.42 |
| AT3G46740.1 | Thale cress | plastid | 94.23 | 71.88 |
| HORVU4Hr1G022900.2 | Barley | mitochondrion | 43.59 | 68.34 |
| VIT_06s0004g05150.t01 | Wine grape | plastid | 88.14 | 68.07 |
| KRH10219 | Soybean | plastid | 85.58 | 67.25 |
| KRH23106 | Soybean | endoplasmic reticulum | 85.9 | 67.0 |
| Solyc06g076360.2.1 | Tomato | plastid | 86.06 | 66.13 |
| TraesCS4D01G119300.1 | Wheat | cytosol | 63.46 | 65.56 |
| PGSC0003DMT400078190 | Potato | plastid | 85.74 | 63.84 |
| CDX78609 | Canola | extracellular | 14.74 | 61.33 |
| CDX70592 | Canola | cytosol | 8.17 | 60.71 |
| CDY33023 | Canola | plastid | 76.6 | 60.28 |
| CDX80294 | Canola | plastid | 77.24 | 59.58 |
| TraesCS4D01G209900.1 | Wheat | plastid | 72.44 | 55.94 |
| HORVU4Hr1G060190.1 | Barley | plastid | 72.6 | 55.86 |
| TraesCS4B01G209200.1 | Wheat | plastid, unclear | 72.44 | 55.8 |
| TraesCS4A01G095300.1 | Wheat | golgi, plastid | 72.28 | 55.75 |
| TraesCS4A01G194000.1 | Wheat | plastid | 65.22 | 53.69 |
| CDX68401 | Canola | cytosol | 99.36 | 52.95 |
| EER95112 | Sorghum | plastid | 72.12 | 52.94 |
| Zm00001d028586_P001 | Maize | plastid | 72.12 | 52.82 |
| Zm00001d047828_P001 | Maize | plasma membrane | 71.63 | 52.4 |
| KXG36538 | Sorghum | nucleus | 65.22 | 51.2 |
| CDY55302 | Canola | cytosol, peroxisome | 10.9 | 26.56 |
| CDX92514 | Canola | cytosol | 14.26 | 22.88 |
| CDX87938 | Canola | cytosol | 12.5 | 21.85 |
| CDY58968 | Canola | nucleus, plastid | 19.87 | 16.96 |
| GSMUA_Achr9P03850_001 | Banana | nucleus, peroxisome, plastid | 4.81 | 12.88 |
| CDX92515 | Canola | nucleus, plastid | 9.46 | 12.34 |
Protein Annotations
| Gene3D:2.40.160.50 | MapMan:23.1.2.1 | Gene3D:3.10.20.310 | GO:A0A078D1K4 | InterPro:Bac_surfAg_D15 | EnsemblPlants:CDX82997 |
| ProteinID:CDX82997 | ProteinID:CDX82997.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0015450 | GO:GO:0016020 | GO:GO:0019867 | EnsemblPlantsGene:GSBRNA2T00138440001 |
| InterPro:IAP75 | PFAM:PF01103 | PANTHER:PTHR12815 | PANTHER:PTHR12815:SF18 | TIGRFAMs:TIGR00992 | UniParc:UPI0004EE8BAF |
Description
BnaA01g19970D
Coordinates
chrLK031831:-:337510..340015
Molecular Weight (calculated)
68984.2 Da
IEP (calculated)
7.814
GRAVY (calculated)
-0.400
Length
624 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSIRPGGVY TKAQLQKELE TLATCGMFEK VDLEGKTKPD GTLGVTISFA ESTWQSADRF RCINVGLMVQ SKPIEMDADM TDKEKLEYYR SLEKDYKRRM
101: DRARPCLLPA PVHGEVMQML RDQGKVSARL LQKIRDRVQK WYQDEGYACA QVVNFGNLNT KEVVCEVVEG DITQVVIQFQ DKLGNVVEGN TQVPIVRREL
201: PKQLRQGYVF NIEDGRQALR NINSLGLFSN IEVNPRQDEK NEGGIIVEIK LKELEQKSAE VSTEWSIVPG PGGAPTLASF QPGGSVTFEH RNIQGLNRSL
301: MGSVTTSNFL NPQDDLSFKL DYVHPYLDGV YNPRNRTFKT SCFNSRKLSP VFTGGPGVDE VPPIWVDRAG VKANITENFT RQSKFTYGLV MEEITTRDES
401: SHIAANGQRL LPSGGISADG PPTTLSGTGI DRMAFLQANI TRDNTKFVNG AVVGERNVFQ VDQGLGIGSK FPFFNRHQFS LTRFIQLQQV EEGAGKPPPP
501: VLVLHGHYGG CVGDLPGYEA FVLGGPYSVR GYNMGELGAA RNTLELGAEI RVPVKNTHVY AFAEHGNDLG SSKDVKGNPT AVYRRMGQGS SYGVGVKLGL
601: VRAEYAVDHN NGTGALFFRF GERY
101: DRARPCLLPA PVHGEVMQML RDQGKVSARL LQKIRDRVQK WYQDEGYACA QVVNFGNLNT KEVVCEVVEG DITQVVIQFQ DKLGNVVEGN TQVPIVRREL
201: PKQLRQGYVF NIEDGRQALR NINSLGLFSN IEVNPRQDEK NEGGIIVEIK LKELEQKSAE VSTEWSIVPG PGGAPTLASF QPGGSVTFEH RNIQGLNRSL
301: MGSVTTSNFL NPQDDLSFKL DYVHPYLDGV YNPRNRTFKT SCFNSRKLSP VFTGGPGVDE VPPIWVDRAG VKANITENFT RQSKFTYGLV MEEITTRDES
401: SHIAANGQRL LPSGGISADG PPTTLSGTGI DRMAFLQANI TRDNTKFVNG AVVGERNVFQ VDQGLGIGSK FPFFNRHQFS LTRFIQLQQV EEGAGKPPPP
501: VLVLHGHYGG CVGDLPGYEA FVLGGPYSVR GYNMGELGAA RNTLELGAEI RVPVKNTHVY AFAEHGNDLG SSKDVKGNPT AVYRRMGQGS SYGVGVKLGL
601: VRAEYAVDHN NGTGALFFRF GERY
001: MAAFSVNGQL IPTATSSTAS TSLSSRRKFL SPSSSRLPRI STQSPRVPSI KCSKSLPNRD TETSSKDSLL KNLAKPLAVA SVSSAASFFL FRISNLPSVL
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY
Arabidopsis Description
TOC75-3Protein TOC75-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STE8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.