CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55302	Canola	cytosol, peroxisome	71.15	99.22
Bra034992.1-P	Field mustard	cytosol	97.48	95.6
AT3G44160.1	Thale cress	cytosol	94.96	93.65
KRH26702	Soybean	cytosol	79.27	78.61
KRH22619	Soybean	cytosol	78.71	78.06
VIT_06s0009g00240.t01	Wine grape	cytosol	76.47	75.83
PGSC0003DMT400007724	Potato	cytosol	75.91	75.28
Solyc11g071890.1.1	Tomato	cytosol, golgi, nucleus	72.27	71.67
AT3G48620.1	Thale cress	extracellular	59.94	66.67
GSMUA_Achr6P31130_001	Banana	cytosol	64.15	63.61
Zm00001d000311_P003	Maize	cytosol	62.47	61.77
Os05t0510200-01	Rice	cytosol, nucleus, plasma membrane	62.18	61.5
GSMUA_Achr9P10370_001	Banana	cytosol	61.9	61.39
TraesCS1D01G330700.3	Wheat	cytosol, nucleus, plastid	61.62	60.77
TraesCS1B01G342000.1	Wheat	cytosol, nucleus, plastid	61.62	60.77
TraesCS1A01G328200.1	Wheat	plastid	57.14	60.18
EES18465	Sorghum	cytosol	60.78	54.11
HORVU1Hr1G077770.9	Barley	plastid	57.14	48.46
CDX92514	Canola	cytosol	35.01	32.13
CDY58968	Canola	nucleus, plastid	36.97	18.06
CDX81332	Canola	mitochondrion	13.45	13.95
CDX82997	Canola	cytosol	21.85	12.5
CDX86093	Canola	cytosol	21.57	12.34
CDX99099	Canola	cytosol, plastid	21.57	10.36
CDY33023	Canola	plastid	22.13	9.96
CDX80294	Canola	plastid	22.13	9.77
CDX68401	Canola	cytosol	21.85	6.66
CDX70592	Canola	cytosol	1.4	5.95
CDX92515	Canola	nucleus, plastid	6.16	4.6
CDX78609	Canola	extracellular	0.84	2.0

Protein Annotations

EnsemblPlants:CDX87938	EnsemblPlantsGene:GSBRNA2T00147219001	Gene3D:2.40.160.50	GO:A0A078DL16	GO:GO:0005575	GO:GO:0016020
GO:GO:0019867	InterPro:Bac_surfAg_D15	PANTHER:PTHR12815	PANTHER:PTHR12815:SF10	PFAM:PF01103	ProteinID:CDX87938
ProteinID:CDX87938.1	SEG:seg	UniParc:UPI0004EED28D	MapMan:19.2.5.2	:	:

Description

BnaC03g54580D

Coordinates

chrLK031853:+:88978..91432

Molecular Weight (calculated)

38675.3 Da

IEP (calculated)

9.521

GRAVY (calculated)

-0.126

Length

357 amino acids

Sequence
(BLAST)

001: MGAQKSIHAG RAKIDVNVDF THKLCTSLMF PAFRDTSKLT ILCIKHPNLF GGSEKLDVSW DKGLYDSNVL VAFRRPRPEW RPQQCFFIQH SLSPEIGVHG
101: TPYDNFSRSG SGGVNLSKLA VGLDLSEPAS SKWSSTTSVK FEHVRPMNDE GRLITRDVDG FPVTCSGNTH DSMVVLKQES RFAKANDQGL SHFSMQIEQG
201: IPVVSKWLIF NRFKFVASKG VRLGPAFLLA SLTGGSIVGD MAPYQAFAIG GLGSVRGYGE GAVGSGRSCL VANTELALPL NKMTEGTIFL DCGTDLGSSR
301: LVPGHPSLRH GKPGFGYGFG YGLRFKSPLG HLQVDYAINA FNQKTLYFGV TNLASSS

Best Arabidopsis Sequence Match ( AT3G44160.1 )
(BLAST)

001: MGAQKSIHAG RAKIDVNVDF THKLCTSLMF PAFRDTSSPL SLVIGSLCIK HPNLFGGSEK LDVSWDKGLY DSNVLVAFRR PRPEWRPQQC FFIQHSLSPE
101: IGVHGTPVDN FSRSGSGGVN LSKLALGLDL SEPASSKWSS TTSIKFEHVR PINDDGRAIT RDLDGFPITC SGNTHDSMVV LKQESRFAKA TDQGLSHFSM
201: QIEQGIPVVS KWLIFNRFKF VASKGVRFGP AFLLASLTGG SIVGDMAPYQ AFAIGGLGSV RGYGEGAVGS GRSCLVANTE LALPLNKMTE GTIFLDCGTD
301: LGSSRLVPGN PSMRQGKPGF GYGFGYGLRF KSPLGHLQVD YAINAFNQKT LYFGVTNLAS ST

Arabidopsis Description

At3g44160 [Source:UniProtKB/TrEMBL;Acc:Q5PP51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.