Factsheet for VIT_06s0009g00240.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26702	Soybean	cytosol	80.83	80.83
PGSC0003DMT400007724	Potato	cytosol	79.72	79.72
KRH22619	Soybean	cytosol	79.72	79.72
CDY55302	Canola	cytosol, peroxisome	55.56	78.12
AT3G44160.1	Thale cress	cytosol	77.78	77.35
Solyc11g071890.1.1	Tomato	cytosol, golgi, nucleus	77.22	77.22
CDX87938	Canola	cytosol	75.83	76.47
Bra034992.1-P	Field mustard	cytosol	76.67	75.82
GSMUA_Achr6P31130_001	Banana	cytosol	64.44	64.44
GSMUA_Achr9P10370_001	Banana	cytosol	64.17	64.17
Zm00001d000311_P003	Maize	cytosol	63.06	62.88
Os05t0510200-01	Rice	cytosol, nucleus, plasma membrane	62.5	62.33
TraesCS1B01G342000.1	Wheat	cytosol, nucleus, plastid	61.39	61.05
TraesCS1D01G330700.3	Wheat	cytosol, nucleus, plastid	61.39	61.05
TraesCS1A01G328200.1	Wheat	plastid	56.39	59.88
EES18465	Sorghum	cytosol	61.67	55.36
AT3G48620.1	Thale cress	extracellular	47.78	53.58
HORVU1Hr1G077770.9	Barley	plastid	57.22	48.93
VIT_06s0004g01880.t01	Wine grape	plastid	38.89	20.8
VIT_06s0004g05150.t01	Wine grape	plastid	21.39	9.53

Protein Annotations

EntrezGene:100263991	wikigene:100263991	MapMan:19.2.5.2	Gene3D:2.40.160.50	InterPro:Bac_surfAg_D15	ProteinID:CBI24437
ProteinID:CBI24437.3	UniProt:D7T1Q7	EMBL:FN595504	GO:GO:0005575	GO:GO:0016020	GO:GO:0019867
EntrezGene:LOC100263991	wikigene:LOC100263991	PFAM:PF01103	PANTHER:PTHR12815	PANTHER:PTHR12815:SF10	TIGR:TC60574
UniParc:UPI00015CCF9D	ArrayExpress:VIT_06s0009g00240	EnsemblPlantsGene:VIT_06s0009g00240	EnsemblPlants:VIT_06s0009g00240.t01	unigene:Vvi.12250	RefSeq:XP_002264436
RefSeq:XP_002264436.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:10243184..10267916

Molecular Weight (calculated)

38985.5 Da

IEP (calculated)

9.411

GRAVY (calculated)

-0.111

Length

360 amino acids

Sequence
(BLAST)

001: MGARKSIHAG KATIDVNVDF THKLCTALML QPFRDSGGPL SQVIGSLCIK HPNLFGRSEK LDVSWDKGLF DSNILIAYRR PRPEWLAQQS FIIQHSLSPE
101: IGVHGFTTDN FSRSVSGGVN LSRFSVGMDL NDPASSNWSN TTSIRFEHVR PISDDGRSVS RDRDGFPVTC SGTFHDSMVV LKQESQFAKA NDHSFTQLNM
201: QIEQGIPVLS KWLIFNRFKF VASKGVRLGP AFLLSSLTGG SIVGDMAPYQ AFAIGGLGSV RGYGEGAVGS GTSCLVANSE LTFPLNKILE GAVFLDFGTD
301: LGSGRHVPGN PALRQGKPGS GVGLGYSLRM KSRLGHFQVD YAINAFQERT VYFGISNLAS

Best Arabidopsis Sequence Match ( AT3G44160.1 )
(BLAST)

001: MGAQKSIHAG RAKIDVNVDF THKLCTSLMF PAFRDTSSPL SLVIGSLCIK HPNLFGGSEK LDVSWDKGLY DSNVLVAFRR PRPEWRPQQC FFIQHSLSPE
101: IGVHGTPVDN FSRSGSGGVN LSKLALGLDL SEPASSKWSS TTSIKFEHVR PINDDGRAIT RDLDGFPITC SGNTHDSMVV LKQESRFAKA TDQGLSHFSM
201: QIEQGIPVVS KWLIFNRFKF VASKGVRFGP AFLLASLTGG SIVGDMAPYQ AFAIGGLGSV RGYGEGAVGS GRSCLVANTE LALPLNKMTE GTIFLDCGTD
301: LGSSRLVPGN PSMRQGKPGF GYGFGYGLRF KSPLGHLQVD YAINAFNQKT LYFGVTNLAS ST

Arabidopsis Description

At3g44160 [Source:UniProtKB/TrEMBL;Acc:Q5PP51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.