Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55302 | Canola | cytosol, peroxisome | 67.68 | 95.7 |
| CDX87938 | Canola | cytosol | 93.65 | 94.96 |
| Bra034992.1-P | Field mustard | cytosol | 93.92 | 93.41 |
| KRH26702 | Soybean | cytosol | 80.94 | 81.39 |
| KRH22619 | Soybean | cytosol | 80.39 | 80.83 |
| VIT_06s0009g00240.t01 | Wine grape | cytosol | 77.35 | 77.78 |
| PGSC0003DMT400007724 | Potato | cytosol | 75.97 | 76.39 |
| Solyc11g071890.1.1 | Tomato | cytosol, golgi, nucleus | 72.65 | 73.06 |
| AT3G48620.1 | Thale cress | extracellular | 59.67 | 67.29 |
| GSMUA_Achr6P31130_001 | Banana | cytosol | 63.81 | 64.17 |
| GSMUA_Achr9P10370_001 | Banana | cytosol | 62.15 | 62.5 |
| Zm00001d000311_P003 | Maize | cytosol | 61.88 | 62.05 |
| Os05t0510200-01 | Rice | cytosol, nucleus, plasma membrane | 61.33 | 61.5 |
| TraesCS1B01G342000.1 | Wheat | cytosol, nucleus, plastid | 61.33 | 61.33 |
| TraesCS1D01G330700.3 | Wheat | cytosol, nucleus, plastid | 61.33 | 61.33 |
| TraesCS1A01G328200.1 | Wheat | plastid | 56.91 | 60.77 |
| EES18465 | Sorghum | cytosol | 60.5 | 54.61 |
| HORVU1Hr1G077770.9 | Barley | plastid | 56.63 | 48.69 |
| AT5G19620.1 | Thale cress | plastid | 37.85 | 18.72 |
| AT4G09080.2 | Thale cress | golgi | 20.17 | 17.94 |
| AT1G35860.1 | Thale cress | nucleus | 14.92 | 13.53 |
| AT3G46740.1 | Thale cress | plastid | 21.55 | 9.54 |
Protein Annotations
| MapMan:19.2.5.2 | Gene3D:2.40.160.50 | EntrezGene:823537 | ProteinID:AEE77870.1 | ArrayExpress:AT3G44160 | EnsemblPlantsGene:AT3G44160 |
| RefSeq:AT3G44160 | TAIR:AT3G44160 | RefSeq:AT3G44160-TAIR-G | EnsemblPlants:AT3G44160.1 | TAIR:AT3G44160.1 | Unigene:At.50243 |
| EMBL:BT020246 | EMBL:BT021139 | InterPro:Bac_surfAg_D15 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009707 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0019867 | GO:GO:0055085 |
| RefSeq:NP_190002.2 | PFAM:PF01103 | PO:PO:0000293 | PANTHER:PTHR12815 | PANTHER:PTHR12815:SF10 | UniProt:Q5PP51 |
| UniParc:UPI000034EFB2 | SEG:seg | : | : | : | : |
Description
At3g44160 [Source:UniProtKB/TrEMBL;Acc:Q5PP51]
Coordinates
chr3:-:15888840..15891988
Molecular Weight (calculated)
39012.7 Da
IEP (calculated)
9.391
GRAVY (calculated)
-0.087
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAQKSIHAG RAKIDVNVDF THKLCTSLMF PAFRDTSSPL SLVIGSLCIK HPNLFGGSEK LDVSWDKGLY DSNVLVAFRR PRPEWRPQQC FFIQHSLSPE
101: IGVHGTPVDN FSRSGSGGVN LSKLALGLDL SEPASSKWSS TTSIKFEHVR PINDDGRAIT RDLDGFPITC SGNTHDSMVV LKQESRFAKA TDQGLSHFSM
201: QIEQGIPVVS KWLIFNRFKF VASKGVRFGP AFLLASLTGG SIVGDMAPYQ AFAIGGLGSV RGYGEGAVGS GRSCLVANTE LALPLNKMTE GTIFLDCGTD
301: LGSSRLVPGN PSMRQGKPGF GYGFGYGLRF KSPLGHLQVD YAINAFNQKT LYFGVTNLAS ST
101: IGVHGTPVDN FSRSGSGGVN LSKLALGLDL SEPASSKWSS TTSIKFEHVR PINDDGRAIT RDLDGFPITC SGNTHDSMVV LKQESRFAKA TDQGLSHFSM
201: QIEQGIPVVS KWLIFNRFKF VASKGVRFGP AFLLASLTGG SIVGDMAPYQ AFAIGGLGSV RGYGEGAVGS GRSCLVANTE LALPLNKMTE GTIFLDCGTD
301: LGSSRLVPGN PSMRQGKPGF GYGFGYGLRF KSPLGHLQVD YAINAFNQKT LYFGVTNLAS ST
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.