Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- extracellular 3
- mitochondrion 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55302 | Canola | cytosol, peroxisome | 65.73 | 82.42 |
| CDX87938 | Canola | cytosol | 66.67 | 59.94 |
| AT3G44160.1 | Thale cress | cytosol | 67.29 | 59.67 |
| Bra034992.1-P | Field mustard | cytosol | 66.98 | 59.07 |
| KRH26702 | Soybean | cytosol | 55.14 | 49.17 |
| KRH22619 | Soybean | cytosol | 54.52 | 48.61 |
| VIT_06s0009g00240.t01 | Wine grape | cytosol | 53.58 | 47.78 |
| PGSC0003DMT400007724 | Potato | cytosol | 52.96 | 47.22 |
| Solyc11g071890.1.1 | Tomato | cytosol, golgi, nucleus | 51.71 | 46.11 |
| GSMUA_Achr6P31130_001 | Banana | cytosol | 47.66 | 42.5 |
| GSMUA_Achr9P10370_001 | Banana | cytosol | 47.04 | 41.94 |
| TraesCS1A01G328200.1 | Wheat | plastid | 44.24 | 41.89 |
| Zm00001d000311_P003 | Maize | cytosol | 46.73 | 41.55 |
| Os05t0510200-01 | Rice | cytosol, nucleus, plasma membrane | 44.55 | 39.61 |
| TraesCS1B01G342000.1 | Wheat | cytosol, nucleus, plastid | 43.93 | 38.95 |
| TraesCS1D01G330700.3 | Wheat | cytosol, nucleus, plastid | 43.93 | 38.95 |
| EES18465 | Sorghum | cytosol | 42.68 | 34.16 |
| HORVU1Hr1G077770.9 | Barley | plastid | 43.61 | 33.25 |
| AT4G09080.2 | Thale cress | golgi | 20.56 | 16.22 |
| AT5G19620.1 | Thale cress | plastid | 32.71 | 14.34 |
| AT1G35860.1 | Thale cress | nucleus | 12.46 | 10.03 |
| AT3G46740.1 | Thale cress | plastid | 21.18 | 8.31 |
Protein Annotations
| Gene3D:2.40.160.50 | MapMan:35.1 | EntrezGene:824022 | ProteinID:AEE78438.1 | ArrayExpress:AT3G48620 | EnsemblPlantsGene:AT3G48620 |
| RefSeq:AT3G48620 | TAIR:AT3G48620 | RefSeq:AT3G48620-TAIR-G | EnsemblPlants:AT3G48620.1 | TAIR:AT3G48620.1 | Unigene:At.53834 |
| InterPro:Bac_surfAg_D15 | UniProt:F4JF35 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0019867 |
| RefSeq:NP_190431.5 | PFAM:PF01103 | PANTHER:PTHR12815 | PANTHER:PTHR12815:SF10 | SignalP:SignalP-noTM | UniParc:UPI0001E92DB4 |
| SEG:seg | : | : | : | : | : |
Description
Outer membrane OMP85 family protein [Source:UniProtKB/TrEMBL;Acc:F4JF35]
Coordinates
chr3:+:18015983..18017821
Molecular Weight (calculated)
34932.1 Da
IEP (calculated)
9.757
GRAVY (calculated)
-0.035
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MFHGIKGCMI PMYWWLLGDL DLNGVRNSAS SYSGGVNLSK LAVGLDLSEP ASSKWSSTTS VKFEVPGHYL LQTLYMCVRL TMTDGRYQRS GRISYNMQNS
101: LLCSGNTHDS MVVLKQESRF AKATDQGLSH FSMQIEQGIP VVSNWLIFNR FKFVASKGVR FGPAFPLASL TGGSIVGDMT PYQAFAIGGL GSVRGYGEVA
201: VGSGRSCLVA NTELANKMTE GTIFLDCGTD LGSSRLVPVS SLYLLRTRTI KKLLRHENDK AVAELVSGNP SLRQGKPGFG YGFGYGLRFK SPLGHLQVDY
301: AMNAFNQKTL YFGITNLASS T
101: LLCSGNTHDS MVVLKQESRF AKATDQGLSH FSMQIEQGIP VVSNWLIFNR FKFVASKGVR FGPAFPLASL TGGSIVGDMT PYQAFAIGGL GSVRGYGEVA
201: VGSGRSCLVA NTELANKMTE GTIFLDCGTD LGSSRLVPVS SLYLLRTRTI KKLLRHENDK AVAELVSGNP SLRQGKPGFG YGFGYGLRFK SPLGHLQVDY
301: AMNAFNQKTL YFGITNLASS T
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.