Factsheet for PGSC0003DMT400007724

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g071890.1.1	Tomato	cytosol, golgi, nucleus	95.83	95.83
VIT_06s0009g00240.t01	Wine grape	cytosol	79.72	79.72
KRH26702	Soybean	cytosol	78.06	78.06
KRH22619	Soybean	cytosol	78.06	78.06
CDY55302	Canola	cytosol, peroxisome	55.28	77.73
AT3G44160.1	Thale cress	cytosol	76.39	75.97
CDX87938	Canola	cytosol	75.28	75.91
Bra034992.1-P	Field mustard	cytosol	76.39	75.55
Zm00001d000311_P003	Maize	cytosol	63.61	63.43
GSMUA_Achr6P31130_001	Banana	cytosol	63.33	63.33
Os05t0510200-01	Rice	cytosol, nucleus, plasma membrane	63.06	62.88
GSMUA_Achr9P10370_001	Banana	cytosol	60.83	60.83
TraesCS1B01G342000.1	Wheat	cytosol, nucleus, plastid	60.83	60.5
TraesCS1D01G330700.3	Wheat	cytosol, nucleus, plastid	60.83	60.5
TraesCS1A01G328200.1	Wheat	plastid	55.56	59.0
EES18465	Sorghum	cytosol	61.94	55.61
AT3G48620.1	Thale cress	extracellular	47.22	52.96
HORVU1Hr1G077770.9	Barley	plastid	56.11	47.98
PGSC0003DMT400021030	Potato	cytosol, nucleus, peroxisome, plastid	37.22	19.14
PGSC0003DMT400078190	Potato	plastid	20.28	8.71

Protein Annotations

EnsemblPlants:PGSC0003DMT400007724	EnsemblPlantsGene:PGSC0003DMG400002985	EntrezGene:102580015	Gene3D:2.40.160.50	GO:GO:0005575	GO:GO:0016020
GO:GO:0019867	InterPro:Bac_surfAg_D15	PANTHER:PTHR12815	PANTHER:PTHR12815:SF10	PFAM:PF01103	PGSC:PGSC0003DMG400002985
RefSeq:XP_006340325.1	UniParc:UPI000294E23C	UniProt:M0ZTF2	MapMan:19.2.5.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400002985]

Coordinates

chr11:-:43326976..43335287

Molecular Weight (calculated)

38908.4 Da

IEP (calculated)

9.336

GRAVY (calculated)

-0.153

Length

360 amino acids

Sequence
(BLAST)

001: MGAQKSIHAG KAKIDVNVDF THKLCAALML QPFRNSGSPL ELVIGSLCIK HPNLFGKSEK LDVLWDKGLY DSNILITYRK PRPEWLAQQS FVVQHSVSPE
101: IGVHGLPDDN FSRSGSGGVN LSRLSAGLDL SEPASSNWSS KTSIKFEHIR PVSDEGRSIN RDTHGFPVTC SGGYNDSMVV VKQESRYAKA NDRSFSQFSL
201: QIEQGVPILS KWLIFNRFKF VASRGLKLGP AFLLSSLTGG SIVGDIAPYQ AFAIGGLGSV RGYGEGAVGC GRSCLVANNE LTFPLSQMLD GAVFLDCGSD
301: LGSGRHVPGN PSLRHGKPGN GIGFGYGLRF KSQLGHFQVD YAVNAFQQRT VYFGFSNLPS

Best Arabidopsis Sequence Match ( AT3G44160.1 )
(BLAST)

001: MGAQKSIHAG RAKIDVNVDF THKLCTSLMF PAFRDTSSPL SLVIGSLCIK HPNLFGGSEK LDVSWDKGLY DSNVLVAFRR PRPEWRPQQC FFIQHSLSPE
101: IGVHGTPVDN FSRSGSGGVN LSKLALGLDL SEPASSKWSS TTSIKFEHVR PINDDGRAIT RDLDGFPITC SGNTHDSMVV LKQESRFAKA TDQGLSHFSM
201: QIEQGIPVVS KWLIFNRFKF VASKGVRFGP AFLLASLTGG SIVGDMAPYQ AFAIGGLGSV RGYGEGAVGS GRSCLVANTE LALPLNKMTE GTIFLDCGTD
301: LGSSRLVPGN PSMRQGKPGF GYGFGYGLRF KSPLGHLQVD YAINAFNQKT LYFGVTNLAS ST

Arabidopsis Description

At3g44160 [Source:UniProtKB/TrEMBL;Acc:Q5PP51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.