Factsheet for PGSC0003DMT400078190

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400051847

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46740.1	PGSC0003DMT400051847	AT1G63900.1	23118188

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076360.2.1	Tomato	plastid	89.98	92.86
CDX86093	Canola	cytosol	64.92	87.18
CDX82997	Canola	cytosol	63.84	85.74
CDX99099	Canola	cytosol, plastid	72.31	81.56
VIT_06s0004g05150.t01	Wine grape	plastid	77.09	79.95
KRH10219	Soybean	plastid	73.75	77.83
KRH23106	Soybean	endoplasmic reticulum	73.39	76.88
Bra033806.1-P	Field mustard	plastid	72.79	75.12
Bra018197.1-P	Field mustard	plastid	73.75	75.09
AT3G46740.1	Thale cress	plastid	73.03	74.82
CDX81332	Canola	mitochondrion	28.76	70.06
HORVU4Hr1G022900.2	Barley	mitochondrion	31.86	67.09
CDY33023	Canola	plastid	61.81	65.32
Bra002581.1-P	Field mustard	plastid	61.81	65.32
CDX80294	Canola	plastid	62.29	64.52
AT1G35860.1	Thale cress	nucleus	30.67	64.41
TraesCS4B01G209200.1	Wheat	plastid, unclear	61.81	63.95
TraesCS4D01G209900.1	Wheat	plastid	61.58	63.86
TraesCS4A01G095300.1	Wheat	golgi, plastid	61.46	63.66
HORVU4Hr1G060190.1	Barley	plastid	61.58	63.63
TraesCS4D01G119300.1	Wheat	cytosol	45.7	63.41
AT4G09080.2	Thale cress	golgi	30.19	62.16
EER95112	Sorghum	plastid	60.26	59.41
Zm00001d028586_P001	Maize	plastid	60.26	59.27
Zm00001d047828_P001	Maize	plasma membrane	60.14	59.09
TraesCS4A01G194000.1	Wheat	plastid	51.07	56.46
KXG36538	Sorghum	nucleus	51.91	54.72
Bra018196.1-P	Field mustard	plastid	72.08	50.29
CDX68401	Canola	cytosol	63.96	45.77
Os12t0115950-00	Rice	nucleus, plasma membrane	11.46	39.51
PGSC0003DMT400007724	Potato	cytosol	8.71	20.28
PGSC0003DMT400021030	Potato	cytosol, nucleus, peroxisome, plastid	15.75	18.86
GSMUA_Achr9P03850_001	Banana	nucleus, peroxisome, plastid	3.46	12.45

Protein Annotations

EnsemblPlants:PGSC0003DMT400078190	EnsemblPlantsGene:PGSC0003DMG400030420	EntrezGene:102601164	Gene3D:2.40.160.50	Gene3D:3.10.20.310	GO:GO:0005575
GO:GO:0016020	GO:GO:0019867	InterPro:Bac_surfAg_D15	PANTHER:PTHR12815	PANTHER:PTHR12815:SF18	PFAM:PF01103
PGSC:PGSC0003DMG400030420	SEG:seg	UniParc:UPI000295D8D4	UniProt:M1CZK6	MapMan:23.1.2.1	:

Description

Sorting and assembly machinery (Sam50) protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030420]

Coordinates

chr6:-:56781950..56785972

Molecular Weight (calculated)

91464.5 Da

IEP (calculated)

8.411

GRAVY (calculated)

-0.337

Length

838 amino acids

Sequence
(BLAST)

001: MASIAAHGLA IPVNRSHRRL NSASTTTGTS VTAASLHPLT IKSKLPTFSS SQNPKPSSSN TRDNSNIFAS KQLQNLVKTS AAIGAGLYAL SSGVSNVLLS
101: GNGGGGSGGG GYGGGGGGGG GGDSFWSKIF SPAAIAGEEE SQEWDSHGLP ANIVVQLNKL SGFKKYKVSD ILFFDRRRGS TVGTEDSFFE MLSLRPGGVY
201: TKAQLQKELE TLATSGMFEK VDLDAKTNPD GTVGVTISFL ESTWQSADKF RCINVGLMPQ SKPIEMDADM TEKEKLEYFN SQEQDYRRRI ERSRPCLLPV
301: SVQREILQLL REKGTVSARL LQKIRDKVQQ WYHDNGYACA QVVNFGNLNT KEVVCEVVEG DITQMVIQFQ DKLGNVCEGN TQYPVVRREL PRQLRQGKVF
401: NIEAGKQALR NINSLALFSN IEVNPRPDEK NEGGIIVEIK LKELEQKSAE VSTEWSIVPG RGGRPTLASI QPGGTVSFEH RNLYGLNRSI LGSVTTSNFL
501: NPQDDLAFKL EYVHPYLDGV YNPRNRTLRT SCFNSRKLSP VFTGGPGVDE VPPIWVDRAG LKANITENFT RQSKFTYGLV MEEITTRDES SHISARGQRV
601: LPSGGISADG PPTTLSETGI DRMAFLQANI TRDNTKFING TIVGERNVFQ MYEILDIISG YISFMDSNVV IGLQVDQGLG VGTKFPFFNR HQLTMTQFIQ
701: LKQVEEGAGK APPPVLVLHG HYGGCVGDLP SYDAFTLGGP YSVRGYNMGE IGAARNIVEL AAELRIPVRN THVYAFAEHG NDLGTSKDVK GNPTEVYRRM
801: GHGSSYGVGV KLGLVRAEYA VDHNSGTGAV FFRFGERF

Best Arabidopsis Sequence Match ( AT3G46740.1 )
(BLAST)

001: MAAFSVNGQL IPTATSSTAS TSLSSRRKFL SPSSSRLPRI STQSPRVPSI KCSKSLPNRD TETSSKDSLL KNLAKPLAVA SVSSAASFFL FRISNLPSVL
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY

Arabidopsis Description

TOC75-3Protein TOC75-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STE8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.