Factsheet for Solyc06g076360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g084360.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46740.1	Solyc06g084360.2.1	AT1G63900.1	23118188

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078190	Potato	plastid	92.86	89.98
CDX86093	Canola	cytosol	67.24	87.5
CDX82997	Canola	cytosol	66.13	86.06
CDX99099	Canola	cytosol, plastid	74.88	81.83
VIT_06s0004g05150.t01	Wine grape	plastid	79.68	80.07
KRH10219	Soybean	plastid	75.86	77.58
KRH23106	Soybean	endoplasmic reticulum	75.49	76.62
Bra018197.1-P	Field mustard	plastid	76.11	75.09
AT3G46740.1	Thale cress	plastid	75.49	74.94
Bra033806.1-P	Field mustard	plastid	74.88	74.88
CDX81332	Canola	mitochondrion	29.93	70.64
HORVU4Hr1G022900.2	Barley	mitochondrion	33.13	67.59
CDY33023	Canola	plastid	63.79	65.32
Bra002581.1-P	Field mustard	plastid	63.79	65.32
AT1G35860.1	Thale cress	nucleus	31.9	64.91
CDX80294	Canola	plastid	64.16	64.4
TraesCS4D01G119300.1	Wheat	cytosol	47.41	63.74
TraesCS4B01G209200.1	Wheat	plastid, unclear	63.55	63.7
TraesCS4A01G095300.1	Wheat	golgi, plastid	63.42	63.66
TraesCS4D01G209900.1	Wheat	plastid	63.3	63.61
HORVU4Hr1G060190.1	Barley	plastid	63.42	63.5
AT4G09080.2	Thale cress	golgi	31.4	62.65
EER95112	Sorghum	plastid	62.93	60.12
Zm00001d028586_P001	Maize	plastid	62.68	59.74
Zm00001d047828_P001	Maize	plasma membrane	62.32	59.32
TraesCS4A01G194000.1	Wheat	plastid	52.96	56.73
KXG36538	Sorghum	nucleus	53.69	54.84
Bra018196.1-P	Field mustard	plastid	74.51	50.37
CDX68401	Canola	cytosol	66.26	45.94
Os12t0115950-00	Rice	nucleus, plasma membrane	11.95	39.92
Solyc11g071890.1.1	Tomato	cytosol, golgi, nucleus	9.11	20.56
Solyc11g062070.1.1	Tomato	plastid	16.26	18.91
Solyc10g079290.1.1	Tomato	plastid	15.76	18.23
GSMUA_Achr9P03850_001	Banana	nucleus, peroxisome, plastid	3.57	12.45

Protein Annotations

Gene3D:2.40.160.50	MapMan:23.1.2.1	Gene3D:3.10.20.310	InterPro:Bac_surfAg_D15	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0015450	GO:GO:0016020	GO:GO:0019867	GO:GO:0071806	InterPro:IAP75	UniProt:K4C9Z6
PFAM:PF01103	PANTHER:PTHR12815	PANTHER:PTHR12815:SF18	EnsemblPlantsGene:Solyc06g076360.2	EnsemblPlants:Solyc06g076360.2.1	TIGRFAMs:TIGR00992
UniParc:UPI0002767113	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:47441565..47445928

Molecular Weight (calculated)

88690.0 Da

IEP (calculated)

8.852

GRAVY (calculated)

-0.383

Length

812 amino acids

Sequence
(BLAST)

001: MASIAAHGLA IPVNRSHRRL NSANTTTGTS VTAASLHPLT IKSKLPSFSS SQNPKPSSSN TRDNSNIFAS KQLQNVVKTS AAIGAGFYAL SSGVSDVLLS
101: GNGGGGSGRG GSGGGGGGGG DSFWSKIFSP AAIAGEEESQ EWDSHGLPAN IVVQLNKLSG FKKYKVSDIL FFDRRRGSTV GTEDSFFEML SLRPGGVYTK
201: AQLQKELETL ATSGMFEKVD LDAKTNPDGT VGVTISFLES TWQSADKFRC INVGLMPQSK PIEMDADMTE KEKLEYFNSQ EQDYRRRIER SRPCLLPVSV
301: QREILQLLRE KGTVSARLLQ KIRDKVQQWY HDNGYACAQV VNFGNLNTKE VVCEVVEGDI TQMVIQFQDK LGNVCEGNTQ YPVVRRELPR QLRQGKVFNI
401: EAGKQALRNI NSLALFSNIE VNPRPDEKNE GGIIVEIKLK ELEQKSAEVS TEWSIVPGRG GRPTLASIQP GGTVSFEHRN LYGLNRSILG SVTTSNFLNP
501: QDDLAFKLEY VHPYLDGVYN PRNRTLRTSC FNSRKLSPVF TGGPGVDEVP PIWVDRAGLK ANITENFTRQ SKFTYGLVME EITTRDESSH ISARGQRVLP
601: SGGISADGPP TTLSETGIDR MAFLQANITR DNTKFINGTI VGERNVFQVD QGLGVGTKFP FFNRHQLTMT QFIQLKQVEE GAGKAPPPVL VLHGHYGGCV
701: GDLPSYDAFT LGGPYSVRGY NMGEIGAARN IVELAAELRI PVRNTHVYAF AEHGNDLGSS KDVKGNPTEV YRRMGHGSSY GVGVKLGLVR AEYAVDHNSG
801: TGAVFFRFGE RF

Best Arabidopsis Sequence Match ( AT3G46740.1 )
(BLAST)

001: MAAFSVNGQL IPTATSSTAS TSLSSRRKFL SPSSSRLPRI STQSPRVPSI KCSKSLPNRD TETSSKDSLL KNLAKPLAVA SVSSAASFFL FRISNLPSVL
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY

Arabidopsis Description

TOC75-3Protein TOC75-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STE8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.