Factsheet for TraesCS4A01G194000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G138100.2
TraesCS2B01G162000.1
TraesCS2D01G141100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46740.1	TraesCS2A01G138100.2	AT1G63900.1	23118188
AT3G46740.1	TraesCS2B01G162000.1	AT1G63900.1	23118188
AT3G46740.1	TraesCS2D01G141100.1	AT1G63900.1	23118188

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G119300.1	Wheat	cytosol	77.57	97.35
HORVU4Hr1G022900.2	Barley	mitochondrion	49.6	94.47
GSMUA_Achr9P03840_001	Banana	cytosol	28.5	69.01
GSMUA_Achr10P...	Banana	cytosol	50.0	68.54
Os11t0116500-01	Rice	cytosol	59.37	68.18
CDX86093	Canola	cytosol	54.35	66.03
CDX82997	Canola	cytosol	53.69	65.22
GSMUA_Achr9P03830_001	Banana	cytosol	11.87	63.83
TraesCS4A01G095300.1	Wheat	golgi, plastid	67.28	63.04
KXG36538	Sorghum	nucleus	64.38	61.38
CDX99099	Canola	cytosol, plastid	58.58	59.76
GSMUA_Achr6P15190_001	Banana	mitochondrion	53.83	55.97
CDX70592	Canola	cytosol	6.2	55.95
KRH10219	Soybean	plastid	57.52	54.91
AT3G46740.1	Thale cress	plastid	59.1	54.77
Bra033806.1-P	Field mustard	plastid	58.58	54.68
VIT_06s0004g05150.t01	Wine grape	plastid	57.92	54.33
Bra018197.1-P	Field mustard	plastid	58.58	53.95
AT1G35860.1	Thale cress	nucleus	28.36	53.88
KRH23106	Soybean	endoplasmic reticulum	56.6	53.62
CDX81332	Canola	mitochondrion	24.27	53.49
Solyc06g076360.2.1	Tomato	plastid	56.73	52.96
AT4G09080.2	Thale cress	golgi	27.57	51.35
PGSC0003DMT400078190	Potato	plastid	56.46	51.07
Bra002581.1-P	Field mustard	plastid	53.03	50.69
CDX78609	Canola	extracellular	10.03	50.67
CDY33023	Canola	plastid	52.9	50.57
CDX80294	Canola	plastid	53.17	49.81
Bra006282.1-P	Field mustard	plasma membrane	11.74	38.53
Bra018196.1-P	Field mustard	plastid	57.39	36.22
CDX68401	Canola	cytosol	53.69	34.76
TraesCS1A01G328200.1	Wheat	plastid	10.69	23.89
TraesCS6A01G158800.1	Wheat	plastid	17.68	20.4
GSMUA_Achr9P03850_001	Banana	nucleus, peroxisome, plastid	4.09	13.3

Protein Annotations

EnsemblPlants:TraesCS4A01G194000.1	EnsemblPlantsGene:TraesCS4A01G194000	Gene3D:2.40.160.50	Gene3D:3.10.20.310	GO:GO:0005575	GO:GO:0016020
GO:GO:0019867	InterPro:Bac_surfAg_D15	PANTHER:PTHR12815	PANTHER:PTHR12815:SF14	PFAM:PF01103	SEG:seg
MapMan:23.1.2.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:475910551..475914614

Molecular Weight (calculated)

82067.0 Da

IEP (calculated)

6.581

GRAVY (calculated)

-0.368

Length

758 amino acids

Sequence
(BLAST)

001: MGFTAIAISS SNPKPRSETP RNAALASAIS AASGSTGLPH PGSEDGGRGL GGLLSWLFNA GAAHAAEEKP PSRDWDAHEF GARTTVPFAR LQGAKRYKVS
101: DVRFLDRRAP GGGGGARLTA GPDDPLFEGA ALRPGEVYTR SQLLGELEAL SSCGMFDGVS VEAVRPQPDG TLGLTVSYAE ALWAPAKRFS CVNMGGLLPA
201: QADEVEDDDM TEREKIALRR RHERAYQQRL GRAKACILPE PVRGEVVEMV RKQGRVSARL LQRIRDCVQR WYYDEGFVCA QVINFGNLDA GEVLCEVVEG
301: EVTGVEYQFQ DKLGNVVEGN TQLPVIDREL PRQLRPGNIF NIGAGKQALK NINALGLFSN IEVNPRPDET KEGGVVVEIK LKEQDPKSAD VETMWNFVPG
401: DQGRPTLASI QPGGGVTFEH RNIGGLNRSL AGSFSSSNLL NPQDDVSFKL EYTHPYLDGV EDRSRNRIFK ASCFNTKKLS PVFVAGPNMD DAPPIWVDRV
501: GIKANITENL TKQSKFTYGL VLEEITARDE SNDVCTHGLR TTAPGALGMD GPPTTFSGTG VDRMAFLQAN VTRDNTEFIN GETIGDRCIF QVDQGLGIGS
601: RNPFFNRHQL TVTKFVNLNK QEKGAGKPPP AVLVAHGRYA GCVGDLPSYD AFALGGPHSV RGYGMGELGA CRNLLEVATE VRIPVPVMKN THVYAFAEHG
701: TDLGSSKDVK GNPTEFFWRA GQGSSYGVGV RFGPLRAEYA VDHNAGTGSV FFRYGDRF

Best Arabidopsis Sequence Match ( AT3G46740.1 )
(BLAST)

001: MAAFSVNGQL IPTATSSTAS TSLSSRRKFL SPSSSRLPRI STQSPRVPSI KCSKSLPNRD TETSSKDSLL KNLAKPLAVA SVSSAASFFL FRISNLPSVL
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY

Arabidopsis Description

TOC75-3Protein TOC75-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STE8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.