Factsheet for TraesCS6A01G158800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

plastid: 22160430
golgi: 23128297

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G153700.1	Wheat	golgi	96.19	95.9
HORVU6Hr1G033430.4	Barley	cytosol	80.21	95.13
TraesCS6B01G192500.1	Wheat	mitochondrion	94.98	94.69
Os02t0196300-01	Rice	mitochondrion, plasma membrane, plastid	83.87	87.6
EES06452	Sorghum	mitochondrion	83.87	83.61
Zm00001d053664_P001	Maize	plastid	82.5	82.5
Zm00001d015837_P001	Maize	plastid	81.89	81.39
CDX92514	Canola	cytosol	45.51	76.86
GSMUA_Achr9P19020_001	Banana	plastid	74.28	73.27
VIT_06s0004g01880.t01	Wine grape	plastid	68.95	67.31
KRH10192	Soybean	plastid	68.8	66.77
KRH23145	Soybean	cytosol, nucleus, plastid	69.25	66.42
Solyc11g062070.1.1	Tomato	plastid	67.12	63.18
Solyc10g079290.1.1	Tomato	plastid	66.51	62.25
CDY58968	Canola	nucleus, plastid	68.34	61.42
Bra002250.1-P	Field mustard	cytosol, plastid	68.04	60.82
AT5G19620.1	Thale cress	plastid	66.82	59.97
PGSC0003DMT400021030	Potato	cytosol, nucleus, peroxisome, plastid	63.77	59.86
CDX92515	Canola	nucleus, plastid	37.29	51.26
TraesCS1A01G328200.1	Wheat	plastid	17.96	34.81
TraesCS4A01G194000.1	Wheat	plastid	20.4	17.68
TraesCS4A01G095300.1	Wheat	golgi, plastid	18.72	15.2

Protein Annotations

Gene3D:2.40.160.50	Gene3D:3.10.20.310	MapMan:35.1	InterPro:Bac_surfAg_D15	InterPro:BamA/TamA_POTRA	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009658	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0019867	InterPro:IPR034746	PFAM:PF01103	PFAM:PF07244	InterPro:POTRA	PFscan:PS51779
PANTHER:PTHR12815	PANTHER:PTHR12815:SF32	EnsemblPlantsGene:TraesCS6A01G158800	EnsemblPlants:TraesCS6A01G158800.1	SEG:seg	:

Description

No Description!

Coordinates

chr6A:-:150233788..150240763

Molecular Weight (calculated)

70966.2 Da

IEP (calculated)

9.133

GRAVY (calculated)

-0.357

Length

657 amino acids

Sequence
(BLAST)

001: MGPRRDGVRF ISSGVKLPRA SPAPAHALLS AALPPFAHIG RAINAAARRV AASFPRVPAA RAETPAAPLP RRHGKDSGGA GGEERVLISE VAVRGKDGEP
101: LERPELEEAA AGALRACRPN AALTVREVQE DVHRVVESGL FRSCMPVAVD TRDGIRLVFE VEPNQDFHGL VCEGANMLPS KFLDDSFRDH HGKIINIRHL
201: DQVIKSINGW YQERGLTGMV SYAEILSGGI LRLQVSEAEV NNINIRFLDR RTGEPTTGKT KPETILQQLT TKKGQAYNRA QVKRDVETIL TMGIMEDVTI
301: IPQPVGDSNK VDLVMNLVER KSGGFSAGGG ISSGITNGPL SGLIGSFAYS QRNVFGRNKK LNLSLERGQI DSIFRLNYTD PWIDGDNKRT SRTVMVQNSR
401: TPGTLIHGGE HPDHSPITIG RVTAGIEYSR PFRPKWSGTL GLIFQHAGAR DDKGNPMIRD FYNSQLTASG NPYDDTLLAK LESVYTDSGD HSSTMFVFNV
501: EQGLPILPEW LSFNRVTARL RQSYEIGPAR LLLSASGGHV EGNFSPHEAF AIGGTNSVRG YEEGAVGSGR SYAVGSGEVS CRLFGPLEGV VFGDYGSDLG
601: SGPTVPGDPA GARGKPGSGY GYGVGIRVDS PLGPLRLEYA FNDKQARRFH FGVGHRN

Best Arabidopsis Sequence Match ( AT5G19620.1 )
(BLAST)

001: MHCHNDDVRF SSSSIRIHSP SPKEQHSLLT NLQSCSKTFV SHLSNTRNSL NQMLQSLKNR HTPPPRSVRR PNLPTQMLNS VTQLMIGKSS PISLSLIQST
101: QFNWSESRDE NVETIRGLSS PLLCCASLSL TRPNESTQSV EGKDTVQQQK GHSVSRNAEE RVLISEVLVR TKDGEELERK DLEMEALAAL KACRANSALT
201: IREVQEDVHR IIESGYFCSC TPVAVDTRDG IRLMFQVEPN QEFRGLVCEN ANVLPSKFIH EAFRDGFGKV INIKRLEEAI TSINGWYMER GLFGIVSDID
301: TLSGGIVRLQ VAEAEVNNIS IRFLDRKTGE PTKGKTSPET ILRQLTTKKG QVYSMLQGKR DVDTVLAMGI MEDVSIIPQP AGDSGKVDLI MNCVERPSGG
401: FSAGGGISSG ITSGPLSGLI GSFAYSHRNL FGRNQKLNVS LERGQIDSIF RINYTDPWIE GDDKRTSRSI MVQNSRTPGN LVHGNQPDNS SLTIGRVTAG
501: VEYSRPFRPK WNGTAGLIFQ HAGARDEQGN PIIKDFYSSP LTASGKPHDE TMLAKLESIY TGSGDQGSTM FAFNMEQGLP VLPEWLCFNR VTGRARKGIH
601: IGPARFLFSL SGGHVVGKFS PHEAFVIGGT NSVRGYEEGA VGSGRSYVVG SGELSFPVRG PVEGVIFTDY GTDMGSGSTV PGDPAGARLK PGSGYGYGLG
701: VRVDSPLGPL RLEYAFNDQH AGRFHFGVGL RN

Arabidopsis Description

OEP80Outer envelope protein 80, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.