Factsheet for Solyc11g062070.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g079290.1.1	Tomato	plastid	88.68	88.18
CDX92514	Canola	cytosol	43.55	78.15
HORVU6Hr1G033430.4	Barley	cytosol	56.73	71.48
KRH10192	Soybean	plastid	67.62	69.72
VIT_06s0004g01880.t01	Wine grape	plastid	67.19	69.69
KRH23145	Soybean	cytosol, nucleus, plastid	68.19	69.49
Os02t0196300-01	Rice	mitochondrion, plasma membrane, plastid	62.61	69.48
GSMUA_Achr9P19020_001	Banana	plastid	65.47	68.62
TraesCS6D01G153700.1	Wheat	golgi	63.61	67.37
TraesCS6A01G158800.1	Wheat	plastid	63.18	67.12
TraesCS6B01G192500.1	Wheat	mitochondrion	63.04	66.77
Zm00001d053664_P001	Maize	plastid	62.46	66.36
EES06452	Sorghum	mitochondrion	62.61	66.31
CDY58968	Canola	nucleus, plastid	68.34	65.25
Zm00001d015837_P001	Maize	plastid	61.6	65.05
Bra002250.1-P	Field mustard	cytosol, plastid	68.19	64.76
AT5G19620.1	Thale cress	plastid	67.77	64.62
CDX92515	Canola	nucleus, plastid	39.83	58.16
Solyc11g071890.1.1	Tomato	cytosol, golgi, nucleus	19.2	37.22
Solyc06g076360.2.1	Tomato	plastid	18.91	16.26

Protein Annotations

EnsemblPlants:Solyc11g062070.1.1	EnsemblPlantsGene:Solyc11g062070.1	Gene3D:2.40.160.50	Gene3D:3.10.20.310	GO:GO:0005575	GO:GO:0016020
GO:GO:0019867	InterPro:Bac_surfAg_D15	InterPro:IPR034746	InterPro:POTRA	ncoils:Coil	PANTHER:PTHR12815
PANTHER:PTHR12815:SF32	PFAM:PF01103	PFscan:PS51779	SEG:seg	UniParc:UPI00027693CD	UniProt:K4D919
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:48920781..48934963

Molecular Weight (calculated)

75989.8 Da

IEP (calculated)

8.171

GRAVY (calculated)

-0.241

Length

698 amino acids

Sequence
(BLAST)

001: MHQNEDVRFT SSSIKLPQFT PLTLHHHTLN PFFTNLHLIL QNFPKFQHPF HRNGGISQNL SKFTHPFHQK FNPQNAILQF LSKPRNINPF SWSLSNTPLL
101: CCASIALAQS NLDGTPLSGP KTGSGNEERV LISEVLVRNK DGEELERKDL ESEALNALKA CRPNSALTVR EVQEDVHRIV ASGYFCSCMP VAVDTRDGIR
201: LVFQVEPNQE FHGLVCEGAS VLPARFIEDS FRDGYGKIVN IKRLDEIISS INGWYMERGL FGAVSGIEML SGGMIRLEVS EAEVNNITIR FLDKTGEPTV
301: GKTRPETILR QLTTKKGQVY SMLQGKRDVD TVLAMGIMED VSIIPQPAGD TGKVDLVMNV VERKSGGGIS AGGGISSGIT GGPLAGLIGS CAIYHKNLFG
401: RNQKLNLSLE RGQIDSIFRI NYTDPWIEGD DKRTSRSIMI QNSRTPGTLV HNHPGGSLTI GRVTAGIEYS RPFRPKWNGT AGIIFQRAGA RDDKGNPIIR
501: DYYSSPLTAS GNTHDDMLLA KLETVYTGSG DPGSSVFVFN MDQGLPVWSE WLVFNRVNAR ARKGLVLGPM RLLLSFSGGH VVGNFPPHEA FVLGGTNSVR
601: GYEEGTVGSG RSYAVGCGEI SFPLMGPLEG AVFADYGTDL GSGPSVPGDP AGARLKPGSG YGCGVGIRVE SPLGPLRLEY AFNDQRTGRF HFGVGLRN

Best Arabidopsis Sequence Match ( AT5G19620.1 )
(BLAST)

001: MHCHNDDVRF SSSSIRIHSP SPKEQHSLLT NLQSCSKTFV SHLSNTRNSL NQMLQSLKNR HTPPPRSVRR PNLPTQMLNS VTQLMIGKSS PISLSLIQST
101: QFNWSESRDE NVETIRGLSS PLLCCASLSL TRPNESTQSV EGKDTVQQQK GHSVSRNAEE RVLISEVLVR TKDGEELERK DLEMEALAAL KACRANSALT
201: IREVQEDVHR IIESGYFCSC TPVAVDTRDG IRLMFQVEPN QEFRGLVCEN ANVLPSKFIH EAFRDGFGKV INIKRLEEAI TSINGWYMER GLFGIVSDID
301: TLSGGIVRLQ VAEAEVNNIS IRFLDRKTGE PTKGKTSPET ILRQLTTKKG QVYSMLQGKR DVDTVLAMGI MEDVSIIPQP AGDSGKVDLI MNCVERPSGG
401: FSAGGGISSG ITSGPLSGLI GSFAYSHRNL FGRNQKLNVS LERGQIDSIF RINYTDPWIE GDDKRTSRSI MVQNSRTPGN LVHGNQPDNS SLTIGRVTAG
501: VEYSRPFRPK WNGTAGLIFQ HAGARDEQGN PIIKDFYSSP LTASGKPHDE TMLAKLESIY TGSGDQGSTM FAFNMEQGLP VLPEWLCFNR VTGRARKGIH
601: IGPARFLFSL SGGHVVGKFS PHEAFVIGGT NSVRGYEEGA VGSGRSYVVG SGELSFPVRG PVEGVIFTDY GTDMGSGSTV PGDPAGARLK PGSGYGYGLG
701: VRVDSPLGPL RLEYAFNDQH AGRFHFGVGL RN

Arabidopsis Description

OEP80Outer envelope protein 80, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.