CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92514	Canola	cytosol	51.57	96.92
Bra002250.1-P	Field mustard	cytosol, plastid	96.44	95.92
CDX92515	Canola	nucleus, plastid	56.63	86.61
AT5G19620.1	Thale cress	plastid	82.08	81.97
VIT_06s0004g01880.t01	Wine grape	plastid	67.72	73.55
HORVU6Hr1G033430.4	Barley	cytosol	55.13	72.74
KRH10192	Soybean	plastid	66.35	71.64
Os02t0196300-01	Rice	mitochondrion, plasma membrane, plastid	61.01	70.91
KRH23145	Soybean	cytosol, nucleus, plastid	66.35	70.8
EES06452	Sorghum	mitochondrion	62.79	69.65
Zm00001d053664_P001	Maize	plastid	62.52	69.56
GSMUA_Achr9P19020_001	Banana	plastid	63.34	69.52
TraesCS6A01G158800.1	Wheat	plastid	61.42	68.34
Solyc11g062070.1.1	Tomato	plastid	65.25	68.34
TraesCS6D01G153700.1	Wheat	golgi	61.56	68.29
Solyc10g079290.1.1	Tomato	plastid	65.39	68.09
TraesCS6B01G192500.1	Wheat	mitochondrion	61.29	67.98
Zm00001d015837_P001	Maize	plastid	61.29	67.78
PGSC0003DMT400021030	Potato	cytosol, nucleus, peroxisome, plastid	63.06	65.86
CDY55302	Canola	cytosol, peroxisome	14.64	41.8
CDX87938	Canola	cytosol	18.06	36.97
CDX70592	Canola	cytosol	2.33	20.24
CDX82997	Canola	cytosol	16.96	19.87
CDX86093	Canola	cytosol	16.96	19.87
CDX81332	Canola	mitochondrion	9.17	19.48
CDX78609	Canola	extracellular	3.69	18.0
CDX99099	Canola	cytosol, plastid	17.78	17.5
CDY33023	Canola	plastid	17.78	16.39
CDX80294	Canola	plastid	18.06	16.32
CDX68401	Canola	cytosol	16.96	10.59

Protein Annotations

EnsemblPlants:CDY58968	EnsemblPlantsGene:GSBRNA2T00025409001	Gene3D:2.40.160.50	Gene3D:3.10.20.310	GO:A0A078J0W9	GO:GO:0005575
GO:GO:0016020	GO:GO:0019867	InterPro:Bac_surfAg_D15	InterPro:IPR034746	InterPro:POTRA	PANTHER:PTHR12815
PANTHER:PTHR12815:SF32	PFAM:PF01103	PFscan:PS51779	ProteinID:CDY58968	ProteinID:CDY58968.1	SEG:seg
UniParc:UPI0004EAFB81	UniProt:A0A078J0W9	MapMan:35.1	:	:	:

Description

BnaC09g38070DBnaC09g38070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0W9]

Coordinates

chrLK033715:+:20907..25462

Molecular Weight (calculated)

79546.2 Da

IEP (calculated)

8.062

GRAVY (calculated)

-0.349

Length

731 amino acids

Sequence
(BLAST)

001: MHGHEDVHFS SSSIRINPES SHDHSFLANL QSCSKTLSSH LSNTRLSLTR MLDSLKTRHT SPRAKPVRRH NSPTQMLNSV TQLMIGSKSP LLSLSLIQST
101: QSIWSDPGAE RLSSPLLCCA SLSLNRPSES STQSVEGKDA IQQQQVQKGH SSASRNAEER VLISEVLVRT KDGEELERKD LEVEALAALK ACRANSALTV
201: REVQEDVHRI IESGYFCSCT PVAVDTRDGI RLMFQVEPNQ EFRGLVCENA NVLPSKFIQE AFQDGFGKVI NIKRLEEAIT SINGWYMERG LFGIVSDVDT
301: LSGGIVRLQV AEAEVNNISI RFLDRKTGEP TKGKTRVETI LRQLTTKKGQ VYSMLQGKRD VDTVLAMGIM EDVSIIPQPA GDSGKVDLIM NCVERPSGGF
401: SAGGGISSGI TSGPLSGLIG SFAYSHRNIF GRNQKLNVSL ERGQIDSIFR INYTDPWIEG DDKRTSRSIM VQNSRTPGNL VHGNQPDNGS LTIGRVTAGI
501: EYSRPFRPKW SGTAGLIFQH AGARDEQGNP IIKDFYSSPL TASGKTHDET LLAKFESIYT GSGEHGSTMF AFNMEQGLPV LPEWLFFNRV NARTRKGIHI
601: GPASFLFSLS GGHVVGNFSP HEAFAIGGTN SVRGYEEGAV GSGRSYVVGS GEVSFPMRGP VEGVLFTDYG TDLGSGNTVP GDPAGARLKP GSGYGYGFGV
701: RVDSPLGPLR LEYAFNDKHN GRFHFGVGQR T

Best Arabidopsis Sequence Match ( AT5G19620.1 )
(BLAST)

001: MHCHNDDVRF SSSSIRIHSP SPKEQHSLLT NLQSCSKTFV SHLSNTRNSL NQMLQSLKNR HTPPPRSVRR PNLPTQMLNS VTQLMIGKSS PISLSLIQST
101: QFNWSESRDE NVETIRGLSS PLLCCASLSL TRPNESTQSV EGKDTVQQQK GHSVSRNAEE RVLISEVLVR TKDGEELERK DLEMEALAAL KACRANSALT
201: IREVQEDVHR IIESGYFCSC TPVAVDTRDG IRLMFQVEPN QEFRGLVCEN ANVLPSKFIH EAFRDGFGKV INIKRLEEAI TSINGWYMER GLFGIVSDID
301: TLSGGIVRLQ VAEAEVNNIS IRFLDRKTGE PTKGKTSPET ILRQLTTKKG QVYSMLQGKR DVDTVLAMGI MEDVSIIPQP AGDSGKVDLI MNCVERPSGG
401: FSAGGGISSG ITSGPLSGLI GSFAYSHRNL FGRNQKLNVS LERGQIDSIF RINYTDPWIE GDDKRTSRSI MVQNSRTPGN LVHGNQPDNS SLTIGRVTAG
501: VEYSRPFRPK WNGTAGLIFQ HAGARDEQGN PIIKDFYSSP LTASGKPHDE TMLAKLESIY TGSGDQGSTM FAFNMEQGLP VLPEWLCFNR VTGRARKGIH
601: IGPARFLFSL SGGHVVGKFS PHEAFVIGGT NSVRGYEEGA VGSGRSYVVG SGELSFPVRG PVEGVIFTDY GTDMGSGSTV PGDPAGARLK PGSGYGYGLG
701: VRVDSPLGPL RLEYAFNDQH AGRFHFGVGL RN

Arabidopsis Description

OEP80Outer envelope protein 80, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.