CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY25541
CDY34384

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46740.1	CDY25541	AT1G63900.1	23118188
AT3G46740.1	CDY34384	AT1G63900.1	23118188

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82997	Canola	cytosol	96.96	96.96
CDX99099	Canola	cytosol, plastid	100.0	83.98
Bra018197.1-P	Field mustard	plastid	99.84	75.7
CDX81332	Canola	mitochondrion	40.87	74.13
AT3G46740.1	Thale cress	plastid	96.47	73.59
HORVU4Hr1G022900.2	Barley	mitochondrion	44.55	69.85
VIT_06s0004g05150.t01	Wine grape	plastid	89.9	69.43
KRH10219	Soybean	plastid	87.02	68.39
KRH23106	Soybean	endoplasmic reticulum	87.34	68.12
Solyc06g076360.2.1	Tomato	plastid	87.5	67.24
TraesCS4D01G119300.1	Wheat	cytosol	64.42	66.56
PGSC0003DMT400078190	Potato	plastid	87.18	64.92
CDX70592	Canola	cytosol	8.65	64.29
CDX78609	Canola	extracellular	15.38	64.0
CDY33023	Canola	plastid	77.24	60.78
CDX80294	Canola	plastid	77.56	59.83
TraesCS4D01G209900.1	Wheat	plastid	73.24	56.56
HORVU4Hr1G060190.1	Barley	plastid	73.4	56.47
TraesCS4B01G209200.1	Wheat	plastid, unclear	73.24	56.42
TraesCS4A01G095300.1	Wheat	golgi, plastid	73.08	56.37
TraesCS4A01G194000.1	Wheat	plastid	66.03	54.35
EER95112	Sorghum	plastid	73.08	53.65
Zm00001d028586_P001	Maize	plastid	73.08	53.52
Zm00001d047828_P001	Maize	plasma membrane	72.6	53.11
CDX68401	Canola	cytosol	97.28	51.84
KXG36538	Sorghum	nucleus	65.87	51.7
CDY55302	Canola	cytosol, peroxisome	10.74	26.17
CDX92514	Canola	cytosol	14.42	23.14
CDX87938	Canola	cytosol	12.34	21.57
CDY58968	Canola	nucleus, plastid	19.87	16.96
GSMUA_Achr9P03850_001	Banana	nucleus, peroxisome, plastid	5.13	13.73
CDX92515	Canola	nucleus, plastid	9.62	12.55

Protein Annotations

Gene3D:2.40.160.50	MapMan:23.1.2.1	Gene3D:3.10.20.310	GO:A0A078DFM5	InterPro:Bac_surfAg_D15	EnsemblPlants:CDX86093
ProteinID:CDX86093	ProteinID:CDX86093.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0015450	GO:GO:0016020	GO:GO:0019867	EnsemblPlantsGene:GSBRNA2T00144123001
InterPro:IAP75	PFAM:PF01103	PANTHER:PTHR12815	PANTHER:PTHR12815:SF18	TIGRFAMs:TIGR00992	UniParc:UPI0004EF3454

Description

BnaC03g56080D

Coordinates

chrLK031844:-:1334595..1337431

Molecular Weight (calculated)

69057.4 Da

IEP (calculated)

8.241

GRAVY (calculated)

-0.390

Length

624 amino acids

Sequence
(BLAST)

001: MVSIRPGGVY TKAQLQKELE TLATCGMFEK VDLEGKTKPD GTLGVTISFA ESTWQSADRF RCINVGLMVQ SKPIEMDTDM TDKEKLEYYR SLEKDYKRRI
101: DRARPCLLPA PVYGEVMQML RDQGKVSARL LQKIRDRVQK WYHDEGYACA QVVNFGNLNT KEVVCEVVEG DITQLVIQYQ DKLGNVVEGN TQVPVVRREL
201: PKQLRQGYVF NIEAGKQALR NINSLGLFSN IEVNPRPDEK NEGGIIVEIK LKELEQKSAE VSTEWSIVPG RGGAPTLASF QPGGSVTFEH RNIQGLNRSL
301: MGSVTTSNFL NPQDDLSFKM EYVHPYLDGV YNPRNRTFKT SCFNSRKLSP VFTGGPGVEE VPPIWVDRAG VKANITENFT RQSKFTYGLV MEEITTRDES
401: SHIAANGQRL LPSGGISADG PPTTLSGTGI DRMAFLQANI TRDNTKFVNG AVVGERNVFQ VDQGLGIGSK FPFFNRHQLT LTRFIQLQQV EEGAGKPPPP
501: VLVLHGHYGG CVGDLPSYDA FVLGGPYSVR GYNMGELGAA RNILELGAEI RVPVKNTHVY AFAEHGNDLG SSKDVKGNPT AVYRRMGQGS SYGVGVKLGL
601: VRAEYAVDHN NGTGALFFRF GERY

Best Arabidopsis Sequence Match ( AT3G46740.1 )
(BLAST)

001: MAAFSVNGQL IPTATSSTAS TSLSSRRKFL SPSSSRLPRI STQSPRVPSI KCSKSLPNRD TETSSKDSLL KNLAKPLAVA SVSSAASFFL FRISNLPSVL
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY

Arabidopsis Description

TOC75-3Protein TOC75-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STE8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.