CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH31972
KRH71471

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46740.1	KRH31972	AT1G63900.1	23118188
AT3G46740.1	KRH71471	AT1G63900.1	23118188

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10219	Soybean	plastid	90.62	91.31
CDX86093	Canola	cytosol	68.12	87.34
CDX82997	Canola	cytosol	67.0	85.9
CDX99099	Canola	cytosol, plastid	75.5	81.29
VIT_06s0004g05150.t01	Wine grape	plastid	76.5	75.74
Bra018197.1-P	Field mustard	plastid	77.75	75.58
Solyc06g076360.2.1	Tomato	plastid	76.62	75.49
Bra033806.1-P	Field mustard	plastid	76.5	75.37
AT3G46740.1	Thale cress	plastid	76.62	74.94
PGSC0003DMT400078190	Potato	plastid	76.88	73.39
HORVU4Hr1G022900.2	Barley	mitochondrion	34.38	69.1
CDX81332	Canola	mitochondrion	29.62	68.9
TraesCS4D01G119300.1	Wheat	cytosol	48.62	64.4
CDX80294	Canola	plastid	65.12	64.4
CDY33023	Canola	plastid	63.5	64.06
Bra002581.1-P	Field mustard	plastid	63.38	63.93
AT1G35860.1	Thale cress	nucleus	31.88	63.91
TraesCS4D01G209900.1	Wheat	plastid	64.12	63.49
TraesCS4B01G209200.1	Wheat	plastid, unclear	64.25	63.46
TraesCS4A01G095300.1	Wheat	golgi, plastid	64.12	63.41
HORVU4Hr1G060190.1	Barley	plastid	64.12	63.26
AT4G09080.2	Thale cress	golgi	31.62	62.16
Zm00001d028586_P001	Maize	plastid	62.88	59.04
EER95112	Sorghum	plastid	62.62	58.94
Zm00001d047828_P001	Maize	plasma membrane	62.38	58.5
TraesCS4A01G194000.1	Wheat	plastid	53.62	56.6
KXG36538	Sorghum	nucleus	54.62	54.97
Bra018196.1-P	Field mustard	plastid	76.25	50.79
CDX68401	Canola	cytosol	67.12	45.86
Os12t0115950-00	Rice	nucleus, plasma membrane	11.88	39.09
KRH19528	Soybean	plastid	3.25	30.59
KRH22619	Soybean	cytosol	10.25	22.78
KRH26702	Soybean	cytosol	10.0	22.22
KRH32153	Soybean	plastid	8.75	19.34
KRH10192	Soybean	plastid	15.25	18.02
KRH23145	Soybean	cytosol, nucleus, plastid	15.25	17.81
GSMUA_Achr9P03850_001	Banana	nucleus, peroxisome, plastid	4.0	13.73

Protein Annotations

EntrezGene:100794483	Gene3D:2.40.160.50	MapMan:23.1.2.1	Gene3D:3.10.20.310	EMBL:ACUP02008457	InterPro:Bac_surfAg_D15
EnsemblPlantsGene:GLYMA_13G338700	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015450	GO:GO:0016020	GO:GO:0019867
GO:GO:0071806	UniProt:I1M4Y9	InterPro:IAP75	EnsemblPlants:KRH23106	ProteinID:KRH23106	ProteinID:KRH23106.1
PFAM:PF01103	PANTHER:PTHR12815	PANTHER:PTHR12815:SF18	TIGRFAMs:TIGR00992	UniParc:UPI000233AE09	SEG:seg

Description

hypothetical protein

Coordinates

chr13:-:43115470..43119709

Molecular Weight (calculated)

87513.7 Da

IEP (calculated)

7.630

GRAVY (calculated)

-0.390

Length

800 amino acids

Sequence
(BLAST)

001: MASFAAPNNI GSAVLPSRQR KPSRPPPLKC SLLPSSNNND SLSNPSSSHT PPLFKAIAIS SAASILLQCT PLSPFFPNPL TKLGGGGNTG GGGGDDGWFG
101: GHGGGGGGGN GGFWSRMFAA VADENQPQEW DSHGLPANIV VQLNKMSGFK KYKVSDISFF DRNRKTKVGT EDSFFEMVSL RPGGVYTKAQ LQKELETLAT
201: SGMFEKVDLE GKTNPDGSIG VTISFSESTW QSADGFRCIN VGLMQQTKPV EMDADMTDKE RLEYYLSQER EYKRRIERAR PCLLPRYVHN EILDMLKRHG
301: MVSARLLQRI RDRVQKWYHD EGYACAQVVN FGNLNTKEVV CEVVEGDITQ LDIQFQDKLG NVVEGNTQVP VIQRELPRQL RSGYTFNIEA GKQALRNVNS
401: LALFSNIEVN PRPDETNEGG IIVEIKLKEL EQKSAEVSTE WSIVPGRGGH PTLASLQPGG TVSFEHRNLQ GLNRSINGSI TTSNFLNPQD DLAFKLEYVH
501: PYLDGVYYSR NRTLRVSCFN SRKLSPVFTG GPGVDEVPPI WVDRTGVKAN ITENFTRQSK FTYGLVMEEI TTRDESSHIC ANGQRVLPSG GISADGPPTT
601: LSGTGIDHMA FLQANITRDN TRFVNGTVVG DRNMFQVDQG LGIGSQFPIF NRHQLTLTRF IQLMAVEEGA GKPPPPVLVL HGHYGGCVGD LPSYDAFTLG
701: GPYSVRGYNM GEIGAARNIL ELAAELRIPV KGTHVYAFAE HGNDLGSSKG VKGNPTEVYR RMGHGSSYGL GVKLGLVRAE YAVDHNSGTG ALFFRFGERF

Best Arabidopsis Sequence Match ( AT3G46740.1 )
(BLAST)

001: MAAFSVNGQL IPTATSSTAS TSLSSRRKFL SPSSSRLPRI STQSPRVPSI KCSKSLPNRD TETSSKDSLL KNLAKPLAVA SVSSAASFFL FRISNLPSVL
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY

Arabidopsis Description

TOC75-3Protein TOC75-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STE8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.