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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • mitochondrion 4
  • cytosol 1
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU2Hr1G024550.6

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G46740.1 HORVU2Hr1G024550.6 AT1G63900.1 23118188
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4D01G119300.1 Wheat cytosol 95.98 63.24
GSMUA_Achr9P03840_001 Banana cytosol 42.96 54.63
GSMUA_Achr10P... Banana cytosol 70.1 50.45
TraesCS4A01G194000.1 Wheat plastid 94.47 49.6
CDX70592 Canola cytosol 10.3 48.81
Os11t0116500-01 Rice cytosol 77.89 46.97
CDX78609 Canola extracellular 16.83 44.67
CDX86093 Canola cytosol 69.85 44.55
CDX82997 Canola cytosol 68.34 43.59
AT1G35860.1 Thale cress nucleus 41.71 41.6
AT4G09080.2 Thale cress golgi 39.95 39.07
KXG36538 Sorghum nucleus 76.88 38.49
HORVU4Hr1G060190.1 Barley plastid 78.39 38.47
GSMUA_Achr9P03830_001 Banana cytosol 13.57 38.3
GSMUA_Achr6P15190_001 Banana mitochondrion 69.35 37.86
CDX99099 Canola cytosol, plastid 69.85 37.42
KRH10219 Soybean plastid 69.6 34.89
VIT_06s0004g05150.t01 Wine grape plastid 70.35 34.65
KRH23106 Soybean endoplasmic reticulum 69.1 34.38
AT3G46740.1 Thale cress plastid 70.35 34.23
Bra033806.1-P Field mustard plastid 69.35 33.99
Bra018197.1-P Field mustard plastid 69.85 33.78
Solyc06g076360.2.1 Tomato plastid 67.59 33.13
CDX81332 Canola mitochondrion 28.39 32.85
CDY33023 Canola plastid 63.82 32.03
Bra002581.1-P Field mustard plastid 63.82 32.03
PGSC0003DMT400078190 Potato plastid 67.09 31.86
Bra006282.1-P Field mustard plasma membrane 18.34 31.6
CDX80294 Canola plastid 63.82 31.4
CDX68401 Canola cytosol 68.34 23.23
Bra018196.1-P Field mustard plastid 68.09 22.56
HORVU1Hr1G077770.9 Barley plastid 18.09 17.1
HORVU6Hr1G033430.4 Barley cytosol 19.6 14.08
GSMUA_Achr9P03850_001 Banana nucleus, peroxisome, plastid 5.28 9.01
Protein Annotations
EnsemblPlants:HORVU4Hr1G022900.2EnsemblPlantsGene:HORVU4Hr1G022900Gene3D:2.40.160.50Gene3D:3.10.20.310GO:GO:0005575GO:GO:0016020
GO:GO:0019867InterPro:Bac_surfAg_D15PANTHER:PTHR12815PANTHER:PTHR12815:SF14PFAM:PF01103SEG:seg
UniParc:UPI000B47B52FUniProt:A0A287NJ05MapMan:35.1:::
Description
No Description!
Coordinates
chrchr4H:+:121994117..122004856
Molecular Weight (calculated)
43206.4 Da
IEP (calculated)
6.777
GRAVY (calculated)
-0.323
Length
398 amino acids
Sequence
(BLAST)
001: MVKKQGRVSA RLLQRIRDCV QRWYHDEGLV CAQVINFGNL DAGEVLCEVV EGEVTGVEYQ FQDKLGNVVE GNTQQLRPGH IFNIGAGKQA LKNINALGLF
101: SNIEVNPRPD ETKEGGVLVE IKLKEQDPKS VEVETVWNFV PGDQGRPTLA SIQPGGGVTF EHRNICCLNR SLAGSFSSSN LLNPQNLTKQ SKFTYGLVLE
201: EITTRDESND VCTHGLRTTA TGALGMGGPP TTFSGTGVDR MAFLQANVTR DNTEFVNGET IGDRCIFQVD QGLGIGSRNP FFNRHQLTVT KFVNLNKQEK
301: GAGKPPPAVL VTHGRYAGCV GDLPSYDAFA LGGPHSVRGY GMGELGACRN LLEVATEVRI PLPVMKNTHV YAFPEHGTDL GSSKDVKGNP TEFFRSVG
Best Arabidopsis Sequence Match ( AT3G46740.1 )
(BLAST)
001: MAAFSVNGQL IPTATSSTAS TSLSSRRKFL SPSSSRLPRI STQSPRVPSI KCSKSLPNRD TETSSKDSLL KNLAKPLAVA SVSSAASFFL FRISNLPSVL
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY
Arabidopsis Description
TOC75-3Protein TOC75-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STE8]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.