Factsheet for GSMUA_Achr9P03850_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P07520_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46740.1	GSMUA_Achr9P07520_001	AT1G63900.1	23118188

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P31130_001	Banana	cytosol	12.02	7.78
AT1G35860.1	Thale cress	nucleus	11.59	6.77
GSMUA_Achr9P10370_001	Banana	cytosol	10.3	6.67
GSMUA_Achr9P19020_001	Banana	plastid	17.17	6.01
CDX81332	Canola	mitochondrion	8.58	5.81
GSMUA_Achr10P...	Banana	cytosol	13.3	5.61
AT4G09080.2	Thale cress	golgi	9.44	5.41
HORVU4Hr1G022900.2	Barley	mitochondrion	9.01	5.28
CDX86093	Canola	cytosol	13.73	5.13
TraesCS4D01G119300.1	Wheat	cytosol	12.88	4.97
CDX82997	Canola	cytosol	12.88	4.81
GSMUA_Achr9P03840_001	Banana	cytosol	6.44	4.79
GSMUA_Achr6P15190_001	Banana	mitochondrion	14.16	4.53
CDX80294	Canola	plastid	15.02	4.33
CDX99099	Canola	cytosol, plastid	13.73	4.31
CDY33023	Canola	plastid	14.59	4.29
Bra002581.1-P	Field mustard	plastid	14.59	4.29
TraesCS4A01G194000.1	Wheat	plastid	13.3	4.09
KRH10219	Soybean	plastid	13.73	4.03
KXG36538	Sorghum	nucleus	13.73	4.03
KRH23106	Soybean	endoplasmic reticulum	13.73	4.0
AT3G46740.1	Thale cress	plastid	13.73	3.91
Bra018197.1-P	Field mustard	plastid	13.73	3.89
VIT_06s0004g05150.t01	Wine grape	plastid	13.3	3.84
TraesCS4D01G209900.1	Wheat	plastid	12.88	3.71
TraesCS4A01G095300.1	Wheat	golgi, plastid	12.88	3.71
TraesCS4B01G209200.1	Wheat	plastid, unclear	12.88	3.7
HORVU4Hr1G060190.1	Barley	plastid	12.88	3.7
Bra033806.1-P	Field mustard	plastid	12.88	3.69
EER95112	Sorghum	plastid	13.3	3.65
Zm00001d028586_P001	Maize	plastid	13.3	3.64
Zm00001d047828_P001	Maize	plasma membrane	13.3	3.63
Solyc06g076360.2.1	Tomato	plastid	12.45	3.57
PGSC0003DMT400078190	Potato	plastid	12.45	3.46
GSMUA_Achr9P03830_001	Banana	cytosol	1.72	2.84
CDX68401	Canola	cytosol	13.3	2.65
Bra018196.1-P	Field mustard	plastid	13.3	2.58

Protein Annotations

EnsemblPlants:GSMUA_Achr9P03850_001	EnsemblPlants:GSMUA_Achr9T03850_001	EnsemblPlantsGene:GSMUA_Achr9G03850_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR12815	PANTHER:PTHR12815:SF18	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002955C1E
UniProt:M0TX94	MapMan:35.1	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G03850_001]

Coordinates

chr9:+:2620275..2621938

Molecular Weight (calculated)

25529.3 Da

IEP (calculated)

9.527

GRAVY (calculated)

-0.441

Length

233 amino acids

Sequence
(BLAST)

001: MGELGACRNI LELAAELRIQ VKNTYIYAFA EHGNDLGSSK DVKGNPTEFF RRARHGSSYG AGMKLGMVRA EYAADHNSGT GADGNADDIS VSSPASSKLW
101: FGLTPPLTSS ARPRRDGWTW KRRFGGDLLK RYRLWQVSVA AEDAIPPEII PTAAEESAAS TVVSALLFVA FIGLFMLTVG VIYLAVQDLL QKRERDKFEK
201: EEAEKTKKGG KKAKAKARTG PRGFGQKIEE DEE

Best Arabidopsis Sequence Match ( AT3G46740.1 )
(BLAST)

001: MAAFSVNGQL IPTATSSTAS TSLSSRRKFL SPSSSRLPRI STQSPRVPSI KCSKSLPNRD TETSSKDSLL KNLAKPLAVA SVSSAASFFL FRISNLPSVL
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY

Arabidopsis Description

TOC75-3Protein TOC75-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STE8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.