Factsheet for HORVU4Hr1G060190.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G024550.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46740.1	HORVU2Hr1G024550.6	AT1G63900.1	23118188

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G095300.1	Wheat	golgi, plastid	99.38	99.63
TraesCS4B01G209200.1	Wheat	plastid, unclear	99.38	99.51
TraesCS4D01G209900.1	Wheat	plastid	98.89	99.26
Os03t0271200-01	Rice	plastid	89.27	88.62
EER95112	Sorghum	plastid	84.96	81.06
Zm00001d047828_P001	Maize	plasma membrane	85.08	80.89
Zm00001d028586_P001	Maize	plastid	84.22	80.16
GSMUA_Achr9P03840_001	Banana	cytosol	30.33	78.59
HORVU4Hr1G022900.2	Barley	mitochondrion	38.47	78.39
GSMUA_Achr10P...	Banana	cytosol	52.03	76.31
CDX86093	Canola	cytosol	56.47	73.4
CDX82997	Canola	cytosol	55.86	72.6
GSMUA_Achr9P03830_001	Banana	cytosol	12.08	69.5
CDX99099	Canola	cytosol, plastid	63.26	69.04
GSMUA_Achr6P15190_001	Banana	mitochondrion	59.31	65.98
VIT_06s0004g05150.t01	Wine grape	plastid	64.73	64.98
KRH10219	Soybean	plastid	63.5	64.86
Bra033806.1-P	Field mustard	plastid	64.24	64.16
KRH23106	Soybean	endoplasmic reticulum	63.26	64.12
Bra018197.1-P	Field mustard	plastid	64.61	63.67
Solyc06g076360.2.1	Tomato	plastid	63.5	63.42
AT3G46740.1	Thale cress	plastid	63.63	63.08
PGSC0003DMT400078190	Potato	plastid	63.63	61.58
Bra002581.1-P	Field mustard	plastid	57.71	59.02
CDY33023	Canola	plastid	57.58	58.89
AT1G35860.1	Thale cress	nucleus	28.73	58.4
CDX80294	Canola	plastid	57.95	58.1
CDX81332	Canola	mitochondrion	24.41	57.56
CDX70592	Canola	cytosol	5.92	57.14
CDX78609	Canola	extracellular	10.48	56.67
AT4G09080.2	Thale cress	golgi	27.62	55.04
Bra006282.1-P	Field mustard	plasma membrane	12.58	44.16
Bra018196.1-P	Field mustard	plastid	63.63	42.96
CDX68401	Canola	cytosol	55.86	38.68
HORVU1Hr1G077770.9	Barley	plastid	11.71	22.57
HORVU6Hr1G033430.4	Barley	cytosol	12.08	17.69
GSMUA_Achr9P03850_001	Banana	nucleus, peroxisome, plastid	3.7	12.88

Protein Annotations

EMBL:AK360039	EMBL:AK366372	EnsemblPlants:HORVU4Hr1G060190.1	EnsemblPlantsGene:HORVU4Hr1G060190	Gene3D:2.40.160.50	Gene3D:3.10.20.310
GO:GO:0005575	GO:GO:0016020	GO:GO:0019867	InterPro:Bac_surfAg_D15	PANTHER:PTHR12815	PANTHER:PTHR12815:SF14
PFAM:PF01103	SEG:seg	UniParc:UPI0002005A2F	UniProt:F2D827	MapMan:23.1.2.1	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D827]

Coordinates

chrchr4H:-:504382270..504387591

Molecular Weight (calculated)

86925.0 Da

IEP (calculated)

7.976

GRAVY (calculated)

-0.323

Length

811 amino acids

Sequence
(BLAST)

001: MALTSQSLFF TPSPAGPSRR GRGRPVTMSA AASHNSQPRN NPFAVSSSAP KSESKTSKTD LALGSAIAAA ASGAFLLASS GGFGGGPGGP LGGGGGWGGG
101: GGGAGAGGGG GGGGFWSRIF SAGAANADDK SSADWDPHGL PANITVPLSK LSGLKRYKLS ELKFFDRAAP GGGGATDAGP EDSFFEMVTL QPGGVYTKSQ
201: LLKELETLVS CGMFERVDLE GKAKPDGTLG LTVSFTESVW SAAKQFKCIN VGLMAQSGQA DFDQDMTERE KMDYLRKQER DYQQRVRGAM PCILPESVRG
301: EVLAMMKKQE KVSARMLQKI RDHVQKWYHN EGFVCAQVVN FGNLNTSEVV CEVVEGDITK VEYQFQDKLG NFVEGNTQIP IIDRELPQQL RPGHIFNIGA
401: GKQALKNINS LALFSNIEVN PRPDETKEGG IVVEIKLKEL EPKSAEVSTE WSIVPGRQGR PTLASIQPGG TVSFEHRNIY GLNRSIVGSV TSSNLLNPQD
501: DLSFKLEYVH PYLDGVDDRN KNRTFKTSCF NTRKLSPVFV AGPNMDEAPP VWVDRVGFKA NITESFTRQS KFTYGLVVEE ITTRDETNSI CTHGSRAMPS
601: GGLSMDGPPT TLSGTGVDRM AFLQANITRD NTEFVNGAVI GDRCIFQLDQ GLGIGSKSPL FNRHQLTLTK FINLNNQEKG VGKPLPAVLV LHGHYAGCVG
701: DLPSYDAFTL GGPYSVRGYG MGELGASRNV LEVAGEVRVP VKNTYVYGFA EHGTDLGSSK DVKGNPTEFF RRVGHGSSYG VGVKLGLVRG EYIVDHNTGA
801: GTVFFRFGER F

Best Arabidopsis Sequence Match ( AT3G46740.1 )
(BLAST)

001: MAAFSVNGQL IPTATSSTAS TSLSSRRKFL SPSSSRLPRI STQSPRVPSI KCSKSLPNRD TETSSKDSLL KNLAKPLAVA SVSSAASFFL FRISNLPSVL
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY

Arabidopsis Description

TOC75-3Protein TOC75-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STE8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.