Factsheet for VIT_06s0004g05150.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0104g00630.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46740.1	VIT_07s0104g00630.t01	AT1G63900.1	23118188

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86093	Canola	cytosol	69.43	89.9
CDX82997	Canola	cytosol	68.07	88.14
CDX99099	Canola	cytosol, plastid	76.98	83.71
Solyc06g076360.2.1	Tomato	plastid	80.07	79.68
Bra033806.1-P	Field mustard	plastid	77.97	77.59
Bra018197.1-P	Field mustard	plastid	78.96	77.52
KRH10219	Soybean	plastid	75.87	77.2
PGSC0003DMT400078190	Potato	plastid	79.95	77.09
KRH23106	Soybean	endoplasmic reticulum	75.74	76.5
AT3G46740.1	Thale cress	plastid	77.23	76.28
HORVU4Hr1G022900.2	Barley	mitochondrion	34.65	70.35
CDX81332	Canola	mitochondrion	29.95	70.35
AT1G35860.1	Thale cress	nucleus	32.8	66.42
CDY33023	Canola	plastid	64.85	66.08
Bra002581.1-P	Field mustard	plastid	64.85	66.08
TraesCS4D01G119300.1	Wheat	cytosol	49.26	65.89
TraesCS4D01G209900.1	Wheat	plastid	64.98	64.98
CDX80294	Canola	plastid	64.98	64.89
TraesCS4A01G095300.1	Wheat	golgi, plastid	64.98	64.89
TraesCS4B01G209200.1	Wheat	plastid, unclear	64.98	64.81
HORVU4Hr1G060190.1	Barley	plastid	64.98	64.73
AT4G09080.2	Thale cress	golgi	31.93	63.39
EER95112	Sorghum	plastid	64.23	61.06
Zm00001d047828_P001	Maize	plasma membrane	63.99	60.61
Zm00001d028586_P001	Maize	plastid	63.61	60.33
TraesCS4A01G194000.1	Wheat	plastid	54.33	57.92
KXG36538	Sorghum	nucleus	55.32	56.23
Bra018196.1-P	Field mustard	plastid	77.35	52.04
CDX68401	Canola	cytosol	68.44	47.22
Os12t0115950-00	Rice	nucleus, plasma membrane	12.25	40.74
VIT_06s0009g00240.t01	Wine grape	cytosol	9.53	21.39
VIT_06s0004g01880.t01	Wine grape	plastid	15.22	18.28
GSMUA_Achr9P03850_001	Banana	nucleus, peroxisome, plastid	3.84	13.3

Protein Annotations

EntrezGene:100263897	wikigene:100263897	Gene3D:2.40.160.50	MapMan:23.1.2.1	Gene3D:3.10.20.310	InterPro:Bac_surfAg_D15
ProteinID:CCB43547	ProteinID:CCB43547.1	UniProt:F6GUY8	EMBL:FN594951	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0015450	GO:GO:0016020	GO:GO:0019867	GO:GO:0071806	InterPro:IAP75	EntrezGene:LOC100263897
wikigene:LOC100263897	PFAM:PF01103	PANTHER:PTHR12815	PANTHER:PTHR12815:SF18	TIGR:TC53471	TIGRFAMs:TIGR00992
UniParc:UPI000198358F	ArrayExpress:VIT_06s0004g05150	EnsemblPlantsGene:VIT_06s0004g05150	EnsemblPlants:VIT_06s0004g05150.t01	unigene:Vvi.14217	RefSeq:XP_002280661
RefSeq:XP_002280661.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:6084868..6089698

Molecular Weight (calculated)

88324.9 Da

IEP (calculated)

8.631

GRAVY (calculated)

-0.361

Length

808 amino acids

Sequence
(BLAST)

001: MASFGAQGQL FSPPLTPSLR PRRRLASSTP ILKAGSSTPA STIKCDLSSS SSSSQNPESL TPKKPFFSLA QALAFSAGAA GILLRFSPVT PLVDSGDFSG
101: GGGVGGTGDG GGGGGDGGFW SRIFSPAAVA KDEESQEWDS HGLPANIVVQ LNKLSGFKKY KISEILFYDR RRGSVVGTED SFFEMVTIRP GGIYNKAQLQ
201: KELENLATCG MFEKVDLEGK TNPDGTVGVT ISFLESTWQS ADKFRCINVG LMPQTKPIEM DADMTDKEKM EYFRNQEKDY KRRIDKSRPC LLPMPVYREI
301: LQMLRDQGKV SARLLQKIRD RVQKWYHDEG YACAQVVNFG NLNTREVVCE VVEGDITQLV IQFQDKLGNV VEGNTQFPVV RRELPKQLRQ GHVFNIEAGK
401: QALRNINSLA LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KTAEVSSEWS IVPGRGGRPT LASIQPGGTV SFEHRNIKGL NRSILGSVTT SNFLNPQDDL
501: AFKLEYVHPY LDGVYNARNR TLRASCFNSR KLSPVFTGGP GVDEVPPIWV DRAGIKANIT ENFTRQSKFT YGLVMEEITT RDESSHISPN GQRVLPSGGI
601: SADGPPTTLS GTGIDRMAFA QANITRDNTK FVNGAIVGER NVFQVDQGLG VGSNFPFFNR HQLTLTRFIQ LKQVEEGAGK PPPPVLVLHG HYGGCVGDLP
701: SYDAFALGGP YSVRGYNMGE LGAARNILEV AAELRIPVRN THVYAFAEHG NDLGSSKDVK GNPTEVYRRM GYGSSYGVGA KLGLVRAEYA VDHNSGTGAV
801: FFRFGERF

Best Arabidopsis Sequence Match ( AT3G46740.1 )
(BLAST)

001: MAAFSVNGQL IPTATSSTAS TSLSSRRKFL SPSSSRLPRI STQSPRVPSI KCSKSLPNRD TETSSKDSLL KNLAKPLAVA SVSSAASFFL FRISNLPSVL
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY

Arabidopsis Description

TOC75-3Protein TOC75-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STE8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.