Factsheet for VIT_07s0104g00630.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole

Predictor Summary:

nucleus 2
cytosol 1
plastid 2
plasma membrane 3
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g02070.t01
VIT_06s0004g05150.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63900.1	VIT_03s0038g02070.t01	AT3G16620.1	23118188
AT1G63900.1	VIT_06s0004g05150.t01	AT3G46740.1	23118188

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051847	Potato	endoplasmic reticulum, golgi	81.92	82.16
KRH31972	Soybean	endoplasmic reticulum, golgi	80.47	81.42
KRH71471	Soybean	endoplasmic reticulum, golgi	80.47	81.42
CDY25541	Canola	endoplasmic reticulum, vacuole	74.64	75.07
Os07t0647800-01	Rice	endoplasmic reticulum	62.68	74.91
EER99814	Sorghum	endoplasmic reticulum, golgi	74.64	74.64
Bra027667.1-P	Field mustard	endoplasmic reticulum, golgi	74.34	74.34
CDY34384	Canola	endoplasmic reticulum, vacuole	74.34	74.34
Solyc06g084360.2.1	Tomato	nucleus	81.92	73.75
AT1G63900.1	Thale cress	endoplasmic reticulum, golgi	73.47	73.47
TraesCS2A01G138100.2	Wheat	endoplasmic reticulum, golgi	72.3	72.73
TraesCS2D01G141100.1	Wheat	endoplasmic reticulum, golgi	72.01	72.43
TraesCS2B01G162000.1	Wheat	endoplasmic reticulum, golgi	72.01	72.43
HORVU2Hr1G024550.6	Barley	endoplasmic reticulum, golgi	71.43	71.85
GSMUA_Achr9P07520_001	Banana	cytosol, mitochondrion, plastid, vacuole	10.79	56.06
Zm00001d007060_P003	Maize	extracellular, plasma membrane	63.27	53.45
AT1G59560.1	Thale cress	endoplasmic reticulum, extracellular, golgi	52.19	52.96
Bra040424.1-P	Field mustard	endoplasmic reticulum, extracellular	53.35	52.59
CDX89169	Canola	extracellular	53.35	52.29
CDX93939	Canola	extracellular	51.9	50.57
Bra007725.1-P	Field mustard	plasma membrane	48.98	43.98
CDY63334	Canola	endoplasmic reticulum, extracellular	48.98	43.19

Protein Annotations

EntrezGene:100247743	wikigene:100247743	MapMan:19.2.2.1.5.3.2	MapMan:19.2.5.1	Gene3D:3.30.40.10	EMBL:AM472308
ProteinID:CAN61807	ProteinID:CAN61807.1	ProteinID:CBI32323	ProteinID:CBI32323.3	UniProt:D7TPA0	EMBL:FN596005
InterPro:GIDE	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0006996
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100247743	wikigene:LOC100247743	PFAM:PF12483
PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR12183	PANTHER:PTHR12183:SF18	SUPFAM:SSF57850	SignalP:SignalP-noTM
TIGR:TC57829	UniParc:UPI00015CB096	ArrayExpress:VIT_07s0104g00630	EnsemblPlantsGene:VIT_07s0104g00630	EnsemblPlants:VIT_07s0104g00630.t01	unigene:Vvi.17057
RefSeq:XP_002274008	RefSeq:XP_002274008.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr7:+:1821493..1830498

Molecular Weight (calculated)

38116.2 Da

IEP (calculated)

8.313

GRAVY (calculated)

-0.134

Length

343 amino acids

Sequence
(BLAST)

001: MIPWGGISCC LSAAALYLLG RSSGRDAEAL KSVTRVQQLK DLVQLLDTAC KVLPLVVTVS GRVGSDTPIK CEYSGLRGVI VEETAEQHFL KHNDAGSWIQ
101: DSALMLSMSK EVPWYLDDDT GRAYIVGARG ATGLVLTVGS EVFEESGRSL VRGTLDYLQG LKMLGVKRIE RVLPTGTPLT VVGEAIKDDV GTIRIQRPHK
201: GPFYVSPKSI DHLVANLGKW ARWYRYASLG FTVFGVYLIA KSAIQYVMER KRCWELRKRV LAAASKKSGQ DSEDPDEKDE NGSDNTKRDR LMPDLCVICL
301: EQEYNAVFVP CGHMCCCTMC SSQLTNCPLC RRRIEQVVRT FRH

Best Arabidopsis Sequence Match ( AT1G63900.1 )
(BLAST)

001: MIPWGGVTCC LSAAALYLLG RSSGRDAEVL ETVTRVNQLK ELAQLLELDS KILPFIVAVS GRVGSETPIK CEHSGIRGVI VEETAEQHFL KHNETGSWVQ
101: DSALMLSMSK EVPWFLDDGT SRVHVMGARG ATGFALTVGS EVFEESGRSL VRGTLDYLQG LKMLGVKRIE RVLPTGIPLT IVGEAVKDDI GEFRIQKPDR
201: GPFYVSSKSL DQLISNLGKW SRLYKYASMG FTVLGVFLIT KHVIDSVLER RRRRQLQKRV LDAAAKRAEL ESEGSNGTRE SISDSTKKED AVPDLCVICL
301: EQEYNAVFVP CGHMCCCTAC SSHLTSCPLC RRRIDLAVKT YRH

Arabidopsis Description

SP1E3 ubiquitin-protein ligase SP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7N4]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.