Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0004g05150.t01 | |
| VIT_06s0004g07730.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16620.1 | VIT_06s0004g07730.t01 | AT1G06950.1 | 15829604 |
| AT3G16620.1 | VIT_06s0004g05150.t01 | AT3G46740.1 | 15829604 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G053280.1 | Barley | mitochondrion | 37.88 | 69.3 |
| CDX70657 | Canola | cytosol | 15.37 | 67.59 |
| PGSC0003DMT400024781 | Potato | cytosol | 53.57 | 64.49 |
| CDY66172 | Canola | cytosol | 49.41 | 63.89 |
| KRH24252 | Soybean | mitochondrion | 58.35 | 61.44 |
| CDX70551 | Canola | cytosol | 17.1 | 60.56 |
| Solyc11g043010.1.1 | Tomato | nucleus | 34.51 | 60.44 |
| AT3G16620.1 | Thale cress | cytosol | 51.45 | 60.24 |
| CDX70659 | Canola | cytosol | 5.1 | 60.19 |
| CDY43117 | Canola | cytosol | 50.43 | 58.24 |
| Bra022170.1-P | Field mustard | nucleus | 48.0 | 57.57 |
| CDX92086 | Canola | cytosol, endoplasmic reticulum, vacuole | 47.92 | 57.48 |
| AT2G16640.3 | Thale cress | cytosol | 53.96 | 57.05 |
| Bra006330.1-P | Field mustard | cytosol | 29.65 | 57.01 |
| CDX78660 | Canola | cytosol | 29.49 | 56.71 |
| EER91974 | Sorghum | cytosol | 43.37 | 55.92 |
| Zm00001d029846_P001 | Maize | plastid | 43.61 | 55.77 |
| Os10t0548800-01 | Rice | cytosol, plasma membrane, plastid | 44.0 | 55.65 |
| CDX92087 | Canola | cytosol | 50.82 | 54.82 |
| Zm00001d047130_P001 | Maize | cytosol | 43.45 | 54.15 |
| KRH29257 | Soybean | endoplasmic reticulum | 58.04 | 54.13 |
| Solyc01g111240.2.1 | Tomato | nucleus | 56.78 | 53.99 |
| PGSC0003DMT400004034 | Potato | cytosol | 57.49 | 53.58 |
| CDX70641 | Canola | cytosol | 32.55 | 51.75 |
| TraesCS1A01G208000.1 | Wheat | cytosol | 42.82 | 51.12 |
| TraesCS1B01G222000.1 | Wheat | cytosol | 43.06 | 51.12 |
| CDX70550 | Canola | cytosol | 11.29 | 50.88 |
| TraesCS1D01G211300.1 | Wheat | cytosol, golgi | 42.75 | 50.74 |
| CDX70658 | Canola | cytosol | 4.47 | 44.53 |
| GSMUA_Achr8P19440_001 | Banana | cytosol | 40.78 | 43.3 |
| VIT_11s0118g00260.t01 | Wine grape | cytosol, mitochondrion, plastid | 26.12 | 41.73 |
| GSMUA_Achr11P... | Banana | cytosol | 44.0 | 39.79 |
| VIT_02s0109g00360.t01 | Wine grape | cytosol | 7.69 | 31.61 |
| VIT_16s0039g02670.t01 | Wine grape | cytosol | 7.61 | 31.49 |
| VIT_07s0005g00180.t01 | Wine grape | plastid | 34.12 | 29.69 |
| VIT_05s0020g01290.t01 | Wine grape | cytosol | 28.94 | 28.58 |
Protein Annotations
| EntrezGene:100262391 | wikigene:100262391 | MapMan:23.1.2.2 | Gene3D:3.40.50.300 | ProteinID:CCB60633 | ProteinID:CCB60633.1 |
| UniProt:F6I117 | EMBL:FN596508 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0016787 | GO:GO:0016817 | InterPro:G_AIG1 | InterPro:IPR006703 | EntrezGene:LOC100262391 |
| wikigene:LOC100262391 | InterPro:P-loop_NTPase | PFAM:PF04548 | PFAM:PF11886 | PFscan:PS51720 | PANTHER:PTHR10903 |
| PANTHER:PTHR10903:SF47 | SUPFAM:SSF52540 | TIGR:TC60635 | TIGRFAMs:TIGR00993 | InterPro:TOC159_MAD | InterPro:Toc86_159 |
| UniParc:UPI00015C9092 | ArrayExpress:VIT_03s0038g02070 | EnsemblPlantsGene:VIT_03s0038g02070 | EnsemblPlants:VIT_03s0038g02070.t01 | unigene:Vvi.3339 | RefSeq:XP_002277504 |
| RefSeq:XP_002277504.2 | RefSeq:XP_010647096.1 | RefSeq:XP_010647103.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3:-:1424949..1429038
Molecular Weight (calculated)
139453.0 Da
IEP (calculated)
4.495
GRAVY (calculated)
-0.656
Length
1275 amino acids
Sequence
(BLAST)
(BLAST)
0001: MENGVEAIDI SHLGEMKGVD DRVFEERVGE GVVSGSDESK DSEGDEIFEE AVDHPMKLES GNVVVDEDGD GKVIDDSESV GIDGNLNVGH EGETFEEAIG
0101: VSGEVRNSEQ AVAGGVEAEV EGLVDREGVD GVGKVNNIDQ ESISKEVVTD DLTGLVDSEE DKGKEVSDAG MDGGMDLLKD GNKVDEVFSV VLEKSENKDS
0201: DDLNLEARPA YENSENGESN KVGKNGIDSD HEHEANGGFL HEDNKSEDLK TSTLNTEHQD GESGEPKNTS SGVSKGENQK EDQPVLDMEC KNEESGELKG
0301: ASSNAEYVDG KYQEANDSLT SLDADHQDDN NVELRVSLGS RHGEDKGEEQ GETLANLVTE HQDSQSREPE ESPVRWESEH HGESAEPKVI SANMYTPVDE
0401: GVSASGTGRS PSVEDSAIEK SEMEQCAIED STIEKSETKQ GVTSELAAAD NISPQPERAV ENVAEVKNKY VVFEEQETKE PNMEKEDQKI QGNREREIRP
0501: AEQVASSSGR SSNPGPPPAH PAGLGRAAPL LEPASRVVQQ PRVNGTTSQV QAQLIEDAGN GEAEENDETR EKLQMIRVKF LRLAHRLGQT PHNVVVAQVL
0601: YRLGLAEQLR GRNGGRVGAF SFDRASAMAE QLEAAGQEPL DFSCTIMVLG KTGVGKSATI NSIFDEVKFS TDAFQVGTKK VQDVVGTVQG IKVRVIDTPG
0701: LLPSWSDQRQ NEKILHSVKR FIKKTPPDIV LYLDRLDMQS RDFGDMPLLR TITEIFGPSI WFNAIVVLTH AASAPPDGPN GTASSYDMFV TQRSHVVQQA
0801: IRQAAGDMRL MNPVSLVENH SACRTNRAGQ RVLPNGQIWK PHLLLLSFAS KILAEANTLL KLQDSPPGKP FTTRSRSPPL PFLLSSLLQS RPQVRLPEEQ
0901: VGDEDTLDED LDDSSDSDDE SEYDELPPFR RLTKAQLSKL TRAQKKAYYD ELEYREKLFM KKQLKEEKER RKMMKKMAAS SKDLPSDYSE NAEEESGGAA
1001: SVPVPMPDWA LPASFDSDNP THRYRYLDSS NQWLVRPVLE THGWDHDVGY EGINVERVFA IKDKIPVSFS GQVTKDKKDA NLQMEIASSV KHGEGKATSV
1101: GFDMQTVGKD MAYTLRSETR FCNFRKNKAT AGLSITALGD AITAGLKLED KLIVNKRIRL VMTGGAMTGR GDVAYGGSLE ATLRDKDHPL GRSLSTLGLS
1201: IMDWHGDLAI GCNIQSQIPI GRFTNMIGRV NLNNRGAGQV SIRLNSSEQL QIALIGLVPL LRKLLGYSQQ GQFGQ
0101: VSGEVRNSEQ AVAGGVEAEV EGLVDREGVD GVGKVNNIDQ ESISKEVVTD DLTGLVDSEE DKGKEVSDAG MDGGMDLLKD GNKVDEVFSV VLEKSENKDS
0201: DDLNLEARPA YENSENGESN KVGKNGIDSD HEHEANGGFL HEDNKSEDLK TSTLNTEHQD GESGEPKNTS SGVSKGENQK EDQPVLDMEC KNEESGELKG
0301: ASSNAEYVDG KYQEANDSLT SLDADHQDDN NVELRVSLGS RHGEDKGEEQ GETLANLVTE HQDSQSREPE ESPVRWESEH HGESAEPKVI SANMYTPVDE
0401: GVSASGTGRS PSVEDSAIEK SEMEQCAIED STIEKSETKQ GVTSELAAAD NISPQPERAV ENVAEVKNKY VVFEEQETKE PNMEKEDQKI QGNREREIRP
0501: AEQVASSSGR SSNPGPPPAH PAGLGRAAPL LEPASRVVQQ PRVNGTTSQV QAQLIEDAGN GEAEENDETR EKLQMIRVKF LRLAHRLGQT PHNVVVAQVL
0601: YRLGLAEQLR GRNGGRVGAF SFDRASAMAE QLEAAGQEPL DFSCTIMVLG KTGVGKSATI NSIFDEVKFS TDAFQVGTKK VQDVVGTVQG IKVRVIDTPG
0701: LLPSWSDQRQ NEKILHSVKR FIKKTPPDIV LYLDRLDMQS RDFGDMPLLR TITEIFGPSI WFNAIVVLTH AASAPPDGPN GTASSYDMFV TQRSHVVQQA
0801: IRQAAGDMRL MNPVSLVENH SACRTNRAGQ RVLPNGQIWK PHLLLLSFAS KILAEANTLL KLQDSPPGKP FTTRSRSPPL PFLLSSLLQS RPQVRLPEEQ
0901: VGDEDTLDED LDDSSDSDDE SEYDELPPFR RLTKAQLSKL TRAQKKAYYD ELEYREKLFM KKQLKEEKER RKMMKKMAAS SKDLPSDYSE NAEEESGGAA
1001: SVPVPMPDWA LPASFDSDNP THRYRYLDSS NQWLVRPVLE THGWDHDVGY EGINVERVFA IKDKIPVSFS GQVTKDKKDA NLQMEIASSV KHGEGKATSV
1101: GFDMQTVGKD MAYTLRSETR FCNFRKNKAT AGLSITALGD AITAGLKLED KLIVNKRIRL VMTGGAMTGR GDVAYGGSLE ATLRDKDHPL GRSLSTLGLS
1201: IMDWHGDLAI GCNIQSQIPI GRFTNMIGRV NLNNRGAGQV SIRLNSSEQL QIALIGLVPL LRKLLGYSQQ GQFGQ
0001: MGDGAEIVTR LYGDEKKLAE DGRISELVGS DEVKDNEEEV FEEAIGSQEG LKPESLKTDV LQEDFPLASN DEVCDLEETS RNERGVENLK VNYSEIGESH
0101: GEVNEQCITT KEADSDLVTL KMNDYDHGEV ADADISYGKM ASSLDVVENS EKATSNLATE DVNLENGNTH SSSENGVVSP DENKELVAEV ISVSACSVET
0201: GSNGIDDEKW EEEIDVSAGM VTEQRNGKTG AEFNSVKIVS GDKSLNDSIE VAAGTLSPLE KSSSEEKGET ESQNSNGGHD IQSNKEIVKQ QDSSVNIGPE
0301: IKESQHMERE SEVLSSVSPT ESRSDTAALP PARPAGLGRA APLLEPAPRV TQQPRVNGNV SHNQPQQAED STTAETDEHD ETREKLQFIR VKFLRLSHRL
0401: GQTPHNVVVA QVLYRLGLAE QLRGRNGSRV GAFSFDRASA MAEQLEAAAQ DPLDFSCTIM VLGKSGVGKS ATINSIFDEL KISTDAFQVG TKKVQDIEGF
0501: VQGIKVRVID TPGLLPSWSD QHKNEKILKS VRAFIKKSPP DIVLYLDRLD MQSRDSGDMP LLRTITDVFG PSIWFNAIVG LTHAASAPPD GPNGTASSYD
0601: MFVTQRSHVI QQAIRQAAGD MRLMNPVSLV ENHSACRTNR AGQRVLPNGQ VWKPHLLLLS FASKILAEAN ALLKLQDNIP GGQFATRSKA PPLPLLLSSL
0701: LQSRPQAKLP EQQYDDEDDE DDLDESSDSE EESEYDELPP FKRLTKAEMT KLSKSQKKEY LDEMEYREKL FMKRQMKEER KRRKLLKKFA AEIKDMPNGY
0801: SENVEEERSE PASVPVPMPD LSLPASFDSD NPTHRYRYLD TSNQWLVRPV LETHGWDHDI GYEGVNAERL FVVKDKIPVS FSGQVTKDKK DAHVQLELAS
0901: SVKHGEGRST SLGFDMQNAG KELAYTIRSE TRFNKFRKNK AAAGLSVTLL GDSVSAGLKV EDKLIANKRF RMVMSGGAMT SRGDVAYGGT LEAQFRDKDY
1001: PLGRFLSTLG LSVMDWHGDL AIGGNIQSQV PIGRSSNLIA RANLNNRGAG QVSIRVNSSE QLQLAVVALV PLFKKLLTYY SPEQMQYGH
0101: GEVNEQCITT KEADSDLVTL KMNDYDHGEV ADADISYGKM ASSLDVVENS EKATSNLATE DVNLENGNTH SSSENGVVSP DENKELVAEV ISVSACSVET
0201: GSNGIDDEKW EEEIDVSAGM VTEQRNGKTG AEFNSVKIVS GDKSLNDSIE VAAGTLSPLE KSSSEEKGET ESQNSNGGHD IQSNKEIVKQ QDSSVNIGPE
0301: IKESQHMERE SEVLSSVSPT ESRSDTAALP PARPAGLGRA APLLEPAPRV TQQPRVNGNV SHNQPQQAED STTAETDEHD ETREKLQFIR VKFLRLSHRL
0401: GQTPHNVVVA QVLYRLGLAE QLRGRNGSRV GAFSFDRASA MAEQLEAAAQ DPLDFSCTIM VLGKSGVGKS ATINSIFDEL KISTDAFQVG TKKVQDIEGF
0501: VQGIKVRVID TPGLLPSWSD QHKNEKILKS VRAFIKKSPP DIVLYLDRLD MQSRDSGDMP LLRTITDVFG PSIWFNAIVG LTHAASAPPD GPNGTASSYD
0601: MFVTQRSHVI QQAIRQAAGD MRLMNPVSLV ENHSACRTNR AGQRVLPNGQ VWKPHLLLLS FASKILAEAN ALLKLQDNIP GGQFATRSKA PPLPLLLSSL
0701: LQSRPQAKLP EQQYDDEDDE DDLDESSDSE EESEYDELPP FKRLTKAEMT KLSKSQKKEY LDEMEYREKL FMKRQMKEER KRRKLLKKFA AEIKDMPNGY
0801: SENVEEERSE PASVPVPMPD LSLPASFDSD NPTHRYRYLD TSNQWLVRPV LETHGWDHDI GYEGVNAERL FVVKDKIPVS FSGQVTKDKK DAHVQLELAS
0901: SVKHGEGRST SLGFDMQNAG KELAYTIRSE TRFNKFRKNK AAAGLSVTLL GDSVSAGLKV EDKLIANKRF RMVMSGGAMT SRGDVAYGGT LEAQFRDKDY
1001: PLGRFLSTLG LSVMDWHGDL AIGGNIQSQV PIGRSSNLIA RANLNNRGAG QVSIRVNSSE QLQLAVVALV PLFKKLLTYY SPEQMQYGH
Arabidopsis Description
TOC120Translocase of chloroplast 120, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LUS2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.