Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400078190 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16620.1 | PGSC0003DMT400078190 | AT3G46740.1 | 15829604 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g111240.2.1 | Tomato | nucleus | 93.35 | 95.23 |
| PGSC0003DMT400024781 | Potato | cytosol | 58.26 | 75.26 |
| HORVU1Hr1G053280.1 | Barley | mitochondrion | 35.23 | 69.15 |
| CDX70657 | Canola | cytosol | 13.96 | 65.86 |
| CDY66172 | Canola | cytosol | 45.18 | 62.68 |
| CDX70659 | Canola | cytosol | 4.68 | 59.26 |
| AT3G16620.1 | Thale cress | cytosol | 47.0 | 59.05 |
| CDX70551 | Canola | cytosol | 15.2 | 57.78 |
| VIT_03s0038g02070.t01 | Wine grape | nucleus | 53.58 | 57.49 |
| KRH24252 | Soybean | mitochondrion | 50.66 | 57.23 |
| CDY43117 | Canola | cytosol | 45.91 | 56.88 |
| CDX92086 | Canola | cytosol, endoplasmic reticulum, vacuole | 43.57 | 56.07 |
| Bra022170.1-P | Field mustard | nucleus | 43.49 | 55.97 |
| CDX78660 | Canola | cytosol | 27.05 | 55.81 |
| Bra006330.1-P | Field mustard | cytosol | 27.05 | 55.81 |
| AT2G16640.3 | Thale cress | cytosol | 48.61 | 55.14 |
| Os10t0548800-01 | Rice | cytosol, plasma membrane, plastid | 40.35 | 54.76 |
| Zm00001d029846_P001 | Maize | plastid | 39.33 | 53.96 |
| EER91974 | Sorghum | cytosol | 38.96 | 53.89 |
| CDX92087 | Canola | cytosol | 45.98 | 53.21 |
| Zm00001d047130_P001 | Maize | cytosol | 39.11 | 52.3 |
| TraesCS1A01G208000.1 | Wheat | cytosol | 39.84 | 51.03 |
| TraesCS1B01G222000.1 | Wheat | cytosol | 40.06 | 51.02 |
| TraesCS1D01G211300.1 | Wheat | cytosol, golgi | 39.77 | 50.65 |
| KRH29257 | Soybean | endoplasmic reticulum | 50.58 | 50.62 |
| CDX70550 | Canola | cytosol | 10.23 | 49.47 |
| CDX70641 | Canola | cytosol | 28.87 | 49.25 |
| CDX70658 | Canola | cytosol | 4.02 | 42.97 |
| GSMUA_Achr8P19440_001 | Banana | cytosol | 36.55 | 41.63 |
| PGSC0003DMT400029640 | Potato | cytosol | 29.53 | 40.64 |
| PGSC0003DMT400078922 | Potato | endoplasmic reticulum | 23.32 | 38.11 |
| GSMUA_Achr11P... | Banana | cytosol | 38.74 | 37.59 |
| PGSC0003DMT400013477 | Potato | cytosol | 7.16 | 32.56 |
| PGSC0003DMT400030414 | Potato | cytosol, plastid | 6.73 | 30.56 |
| PGSC0003DMT400016119 | Potato | cytosol, nucleus, plastid | 26.9 | 27.04 |
Protein Annotations
| MapMan:23.1.2.2 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0016787 | GO:GO:0016817 | InterPro:G_AIG1 | InterPro:IPR006703 | UniProt:M0ZMS2 |
| InterPro:P-loop_NTPase | PFAM:PF04548 | PFAM:PF11886 | EnsemblPlantsGene:PGSC0003DMG400001593 | PGSC:PGSC0003DMG400001593 | EnsemblPlants:PGSC0003DMT400004034 |
| PFscan:PS51720 | PANTHER:PTHR10903 | PANTHER:PTHR10903:SF47 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00993 | InterPro:TOC159_MAD |
| InterPro:Toc86_159 | UniParc:UPI00029566E0 | SEG:seg | : | : | : |
Description
Protein translocase [Source:PGSC_GENE;Acc:PGSC0003DMG400001593]
Coordinates
chr1:-:87249945..87255682
Molecular Weight (calculated)
149805.0 Da
IEP (calculated)
4.475
GRAVY (calculated)
-0.680
Length
1368 amino acids
Sequence
(BLAST)
(BLAST)
0001: MENGEEIFGK ARMDEWNGVV DETIEVRQED KVAVVSHVSK ESEGDEVFEE AIEPESPGFG VEDGVVSEGR NDGNSGDINS SIEDSRNSES RDDVENFEEA
0101: VEVLHEMQHT DDESNQKADV ILKEEPSVEK QSSHEIAAPD ETEVVEKNII VGKGKDDMSE VADLGAAIET ETSVNWDERK DNSGEPTEFD NGVFDHVNLG
0201: GTQSHDDAKE TNSDQQDQEV HGKLDAQDAN EAEAGNNVLQ NQVHSYKDAL LHDEKKVDVF ETSAVQPAGH QDTADVHNNV SVSSGSVLKD EGDTEWEGVL
0301: KSLDSDVKDE EQKDIFPNDA STNGHLSESL NPSDELKEEA GPSPERINGY NMNEEQIDVE RTMPSPELVN GSNKDEEQQI DGVKAVHSPE PVNGSNKDEE
0401: QQLDGVKAIS PEPVNGSNKD EGQQLDGEKA VCSPEPINIS NKDEQQIDGS DNDSVSILQG GHFPVKAEVT EKESTGPELM GDATDDQGLK LNESPTMEPG
0501: NLNDRTNEQK DVSVSDSSAS VNHTGISVRG RVTADDEMSK SSEALPSDNH EKVSKVSQDA GVGVEKVAEK ESVSVVVKGL KQSVPRVREP EARSATEHPS
0601: SSNASATRIP APAGLGRAAP LLEPAPRVVQ QPRVNGTASP AQNQLVEEST NGEADEYDET REKLQMIRVK FLRLAHRNGQ TPHNVVVAQV LYRLGLAEQL
0701: RGRSGGRVGA FSFDRASAMA EQLEAAGQEP LDFSCTIMVL GKTGVGKSAT INSIFDEVKF DTDAFQIGTK KVQDVVGTVQ GIKVRVIDTP GLLPSWSDQR
0801: QNEKILHSVK RFIKKTPPDI VLYLDRLDMQ SRDNGDMPLL RTITEIFGPS IWFNAIVVLT HAASAPPEGP NGTVTSYDMF VTQRSHVVQQ AIRQAAGDMR
0901: LMNPVSLVEN HSACRTNRAG QRVLPNGQVW RPHLLLLSFA SKILAEANTL LKLQDSSAPG QPYATRTRSP PLPFLLSSLL QSRPQVKLPA EQFDDDDEAL
1001: DDDLDESSES EDESEYDQLP PFKRLTKAQL AKLSKEQKKA YNDELEYREK LFMKKQLKEE RKRRKMMKKM QAAAESLPPT DPSENVDEET GGASSVPVPM
1101: PDLALPASFD SDNPTHRYRY LDSSNQWLVR PVLEPNGWDH DVGYEGINVE RLFVVKDKIP ISLSSQVSKD KKDTNLQMEI ASSVKHGHGK ATSLGFDMQS
1201: VGKDLAYTLR SETRFCNYRK NKATAGLSVT LLGDVMTGGV KIEDRLTFNR RGSLVVSGGA MFGRGDAAYG GSLEATLRDK DYPLGRFLST LGLSVMDWHG
1301: DLAIGCNSQT QIPIGRYTNL IGRVNINNKG SGQVSIRLNS SEQLQIALIS LIPLVRKLIS YSQPAQYG
0101: VEVLHEMQHT DDESNQKADV ILKEEPSVEK QSSHEIAAPD ETEVVEKNII VGKGKDDMSE VADLGAAIET ETSVNWDERK DNSGEPTEFD NGVFDHVNLG
0201: GTQSHDDAKE TNSDQQDQEV HGKLDAQDAN EAEAGNNVLQ NQVHSYKDAL LHDEKKVDVF ETSAVQPAGH QDTADVHNNV SVSSGSVLKD EGDTEWEGVL
0301: KSLDSDVKDE EQKDIFPNDA STNGHLSESL NPSDELKEEA GPSPERINGY NMNEEQIDVE RTMPSPELVN GSNKDEEQQI DGVKAVHSPE PVNGSNKDEE
0401: QQLDGVKAIS PEPVNGSNKD EGQQLDGEKA VCSPEPINIS NKDEQQIDGS DNDSVSILQG GHFPVKAEVT EKESTGPELM GDATDDQGLK LNESPTMEPG
0501: NLNDRTNEQK DVSVSDSSAS VNHTGISVRG RVTADDEMSK SSEALPSDNH EKVSKVSQDA GVGVEKVAEK ESVSVVVKGL KQSVPRVREP EARSATEHPS
0601: SSNASATRIP APAGLGRAAP LLEPAPRVVQ QPRVNGTASP AQNQLVEEST NGEADEYDET REKLQMIRVK FLRLAHRNGQ TPHNVVVAQV LYRLGLAEQL
0701: RGRSGGRVGA FSFDRASAMA EQLEAAGQEP LDFSCTIMVL GKTGVGKSAT INSIFDEVKF DTDAFQIGTK KVQDVVGTVQ GIKVRVIDTP GLLPSWSDQR
0801: QNEKILHSVK RFIKKTPPDI VLYLDRLDMQ SRDNGDMPLL RTITEIFGPS IWFNAIVVLT HAASAPPEGP NGTVTSYDMF VTQRSHVVQQ AIRQAAGDMR
0901: LMNPVSLVEN HSACRTNRAG QRVLPNGQVW RPHLLLLSFA SKILAEANTL LKLQDSSAPG QPYATRTRSP PLPFLLSSLL QSRPQVKLPA EQFDDDDEAL
1001: DDDLDESSES EDESEYDQLP PFKRLTKAQL AKLSKEQKKA YNDELEYREK LFMKKQLKEE RKRRKMMKKM QAAAESLPPT DPSENVDEET GGASSVPVPM
1101: PDLALPASFD SDNPTHRYRY LDSSNQWLVR PVLEPNGWDH DVGYEGINVE RLFVVKDKIP ISLSSQVSKD KKDTNLQMEI ASSVKHGHGK ATSLGFDMQS
1201: VGKDLAYTLR SETRFCNYRK NKATAGLSVT LLGDVMTGGV KIEDRLTFNR RGSLVVSGGA MFGRGDAAYG GSLEATLRDK DYPLGRFLST LGLSVMDWHG
1301: DLAIGCNSQT QIPIGRYTNL IGRVNINNKG SGQVSIRLNS SEQLQIALIS LIPLVRKLIS YSQPAQYG
0001: MGDGAEIVTR LYGDEKKLAE DGRISELVGS DEVKDNEEEV FEEAIGSQEG LKPESLKTDV LQEDFPLASN DEVCDLEETS RNERGVENLK VNYSEIGESH
0101: GEVNEQCITT KEADSDLVTL KMNDYDHGEV ADADISYGKM ASSLDVVENS EKATSNLATE DVNLENGNTH SSSENGVVSP DENKELVAEV ISVSACSVET
0201: GSNGIDDEKW EEEIDVSAGM VTEQRNGKTG AEFNSVKIVS GDKSLNDSIE VAAGTLSPLE KSSSEEKGET ESQNSNGGHD IQSNKEIVKQ QDSSVNIGPE
0301: IKESQHMERE SEVLSSVSPT ESRSDTAALP PARPAGLGRA APLLEPAPRV TQQPRVNGNV SHNQPQQAED STTAETDEHD ETREKLQFIR VKFLRLSHRL
0401: GQTPHNVVVA QVLYRLGLAE QLRGRNGSRV GAFSFDRASA MAEQLEAAAQ DPLDFSCTIM VLGKSGVGKS ATINSIFDEL KISTDAFQVG TKKVQDIEGF
0501: VQGIKVRVID TPGLLPSWSD QHKNEKILKS VRAFIKKSPP DIVLYLDRLD MQSRDSGDMP LLRTITDVFG PSIWFNAIVG LTHAASAPPD GPNGTASSYD
0601: MFVTQRSHVI QQAIRQAAGD MRLMNPVSLV ENHSACRTNR AGQRVLPNGQ VWKPHLLLLS FASKILAEAN ALLKLQDNIP GGQFATRSKA PPLPLLLSSL
0701: LQSRPQAKLP EQQYDDEDDE DDLDESSDSE EESEYDELPP FKRLTKAEMT KLSKSQKKEY LDEMEYREKL FMKRQMKEER KRRKLLKKFA AEIKDMPNGY
0801: SENVEEERSE PASVPVPMPD LSLPASFDSD NPTHRYRYLD TSNQWLVRPV LETHGWDHDI GYEGVNAERL FVVKDKIPVS FSGQVTKDKK DAHVQLELAS
0901: SVKHGEGRST SLGFDMQNAG KELAYTIRSE TRFNKFRKNK AAAGLSVTLL GDSVSAGLKV EDKLIANKRF RMVMSGGAMT SRGDVAYGGT LEAQFRDKDY
1001: PLGRFLSTLG LSVMDWHGDL AIGGNIQSQV PIGRSSNLIA RANLNNRGAG QVSIRVNSSE QLQLAVVALV PLFKKLLTYY SPEQMQYGH
0101: GEVNEQCITT KEADSDLVTL KMNDYDHGEV ADADISYGKM ASSLDVVENS EKATSNLATE DVNLENGNTH SSSENGVVSP DENKELVAEV ISVSACSVET
0201: GSNGIDDEKW EEEIDVSAGM VTEQRNGKTG AEFNSVKIVS GDKSLNDSIE VAAGTLSPLE KSSSEEKGET ESQNSNGGHD IQSNKEIVKQ QDSSVNIGPE
0301: IKESQHMERE SEVLSSVSPT ESRSDTAALP PARPAGLGRA APLLEPAPRV TQQPRVNGNV SHNQPQQAED STTAETDEHD ETREKLQFIR VKFLRLSHRL
0401: GQTPHNVVVA QVLYRLGLAE QLRGRNGSRV GAFSFDRASA MAEQLEAAAQ DPLDFSCTIM VLGKSGVGKS ATINSIFDEL KISTDAFQVG TKKVQDIEGF
0501: VQGIKVRVID TPGLLPSWSD QHKNEKILKS VRAFIKKSPP DIVLYLDRLD MQSRDSGDMP LLRTITDVFG PSIWFNAIVG LTHAASAPPD GPNGTASSYD
0601: MFVTQRSHVI QQAIRQAAGD MRLMNPVSLV ENHSACRTNR AGQRVLPNGQ VWKPHLLLLS FASKILAEAN ALLKLQDNIP GGQFATRSKA PPLPLLLSSL
0701: LQSRPQAKLP EQQYDDEDDE DDLDESSDSE EESEYDELPP FKRLTKAEMT KLSKSQKKEY LDEMEYREKL FMKRQMKEER KRRKLLKKFA AEIKDMPNGY
0801: SENVEEERSE PASVPVPMPD LSLPASFDSD NPTHRYRYLD TSNQWLVRPV LETHGWDHDI GYEGVNAERL FVVKDKIPVS FSGQVTKDKK DAHVQLELAS
0901: SVKHGEGRST SLGFDMQNAG KELAYTIRSE TRFNKFRKNK AAAGLSVTLL GDSVSAGLKV EDKLIANKRF RMVMSGGAMT SRGDVAYGGT LEAQFRDKDY
1001: PLGRFLSTLG LSVMDWHGDL AIGGNIQSQV PIGRSSNLIA RANLNNRGAG QVSIRVNSSE QLQLAVVALV PLFKKLLTYY SPEQMQYGH
Arabidopsis Description
TOC120Translocase of chloroplast 120, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LUS2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.