Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22065420
plastid: 23198870 mitochondrion: 27297264 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d004430_P001 | |
| Zm00001d028586_P001 | |
| Zm00001d032615_P002 | |
| Zm00001d047828_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER91974 | Sorghum | cytosol | 88.16 | 88.88 |
| Zm00001d047130_P001 | Maize | cytosol | 89.37 | 87.1 |
| HORVU1Hr1G053280.1 | Barley | mitochondrion | 60.38 | 86.37 |
| Os10t0548800-01 | Rice | cytosol, plasma membrane, plastid | 75.93 | 75.1 |
| TraesCS1A01G208000.1 | Wheat | cytosol | 72.92 | 68.07 |
| TraesCS1B01G222000.1 | Wheat | cytosol | 73.12 | 67.88 |
| TraesCS1D01G211300.1 | Wheat | cytosol, golgi | 72.92 | 67.69 |
| CDX70657 | Canola | cytosol | 16.15 | 55.52 |
| CDX70659 | Canola | cytosol | 5.62 | 51.85 |
| CDY66172 | Canola | cytosol | 50.25 | 50.81 |
| CDX70551 | Canola | cytosol | 17.75 | 49.17 |
| PGSC0003DMT400024781 | Potato | cytosol | 52.06 | 49.01 |
| CDX78660 | Canola | cytosol | 32.2 | 48.42 |
| Bra006330.1-P | Field mustard | cytosol | 32.0 | 48.11 |
| AT3G16620.1 | Thale cress | cytosol | 51.05 | 46.74 |
| Solyc11g043010.1.1 | Tomato | nucleus | 33.4 | 45.74 |
| CDY43117 | Canola | cytosol | 50.45 | 45.56 |
| Bra022170.1-P | Field mustard | nucleus | 47.94 | 44.97 |
| CDX92086 | Canola | cytosol, endoplasmic reticulum, vacuole | 47.84 | 44.87 |
| KRH24252 | Soybean | mitochondrion | 54.16 | 44.59 |
| CDX70550 | Canola | cytosol | 12.44 | 43.82 |
| AT2G16640.3 | Thale cress | cytosol | 52.86 | 43.7 |
| VIT_03s0038g02070.t01 | Wine grape | nucleus | 55.77 | 43.61 |
| CDX70641 | Canola | cytosol | 35.01 | 43.52 |
| CDX92087 | Canola | cytosol | 50.45 | 42.55 |
| GSMUA_Achr8P19440_001 | Banana | cytosol | 49.45 | 41.05 |
| KRH29257 | Soybean | endoplasmic reticulum | 54.36 | 39.65 |
| PGSC0003DMT400004034 | Potato | cytosol | 53.96 | 39.33 |
| Solyc01g111240.2.1 | Tomato | nucleus | 52.46 | 39.0 |
| GSMUA_Achr11P... | Banana | cytosol | 52.56 | 37.16 |
| Zm00001d035254_P001 | Maize | plastid | 29.09 | 36.99 |
| CDX70658 | Canola | cytosol | 4.71 | 36.72 |
| Zm00001d010852_P002 | Maize | plastid | 41.02 | 33.89 |
| Zm00001d035812_P003 | Maize | plastid | 41.62 | 31.9 |
| Zm00001d012893_P002 | Maize | cytosol, plastid | 31.49 | 27.59 |
| Zm00001d028373_P002 | Maize | cytosol | 9.23 | 27.54 |
| Zm00001d034755_P001 | Maize | cytosol | 30.99 | 26.78 |
| Zm00001d047965_P002 | Maize | cytosol | 9.13 | 25.71 |
Protein Annotations
| EntrezGene:103637626 | MapMan:23.1.2.2 | Gene3D:3.40.50.300 | UniProt:A0A1D6K830 | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | GO:GO:0016817 |
| InterPro:G_AIG1 | InterPro:IPR006703 | ProteinID:ONL99696.1 | InterPro:P-loop_NTPase | PFAM:PF04548 | PFAM:PF11886 |
| PFscan:PS51720 | PANTHER:PTHR10903 | PANTHER:PTHR10903:SF47 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00993 | InterPro:TOC159_MAD |
| InterPro:Toc86_159 | UniParc:UPI000220A91D | EnsemblPlantsGene:Zm00001d029846 | EnsemblPlants:Zm00001d029846_P001 | EnsemblPlants:Zm00001d029846_T001 | SEG:seg |
Description
Translocase of chloroplast 120 chloroplastic
Coordinates
chr1:-:89860313..89863306
Molecular Weight (calculated)
108403.0 Da
IEP (calculated)
4.973
GRAVY (calculated)
-0.480
Length
997 amino acids
Sequence
(BLAST)
(BLAST)
001: MENGGGVGEG RSENRAGENG GVAEAATAAD EGDCDVVVEG GDEGDMPPGA VAAGDHQPMV TPNTRAVLET GQLAADKWDE DDTPRFIDVE ESFADDVNQD
101: HVEENAMGQS IREYVTAAVL ADRKKERLDK DHNFFATRDN KAEVAAQSGS EYEDVKDGTL VYQSKEQPGT STEDIASSHS RPGTVTHSAA EPAVAIEELD
201: DSSSSADENT ATSAPPAQFS SGSSTPAQSS SAASARSTNG PSLPSRPAGL GSSSSLSQPP ARSVQQVHAN RPAIVERGTQ GATEDDGDEN DEIHEKLQMI
301: RVKFLRLANR FGQTYHNMVV SQVLYRLGLA EQLRRTTSNG SFSIDRARDM AERLEAAGNA PLDFSCTILV LGKTGVGKSA TINSVFDDTR LDTNAFDSST
401: RKVQEVVGMV EGIKVKVIDT PGLSCSSLEQ HRNQKVLNSV KRLISKNPPD IVLYFDRLDM QSRDNCDVPL LQTITKVFGA SVWFNAIVVL THAASAPPDG
501: QNGIPLSYEM FVTQRSHVVQ QAIRQAAGDV RLMNPVSLVE NHSACRTNRA GQRVLPNGQV WKPQLLLLCF ASKVLAEANV LLKLQDSPIG KLSRTRIPPL
601: PFLLSSLLQS RAPLKLPEEQ FGGDDDDLED DLADDSDSDD GSDYDDLPPF KRLTKAQLAK LNREQRKAYL EELDYREKLF YQKQLKEERK RRKLMKKMAA
701: EASARANDFS NSNLEDDATT PTNVSVPMPD MVLPSSFDSD YPSHRYRFLD TPSEWLVRPV LETQGWDHDV GYEGLNVERL FAVKGKVPLS VSGQLTKDKK
801: DCSLQMEVAS SIKHAEGKTT SLGLDLQSVG RDMAYTIRGE SRFKNFRRNN TSAGISATLL GDSVSAGMKI EDKLIVNKQL RVLVSSGAMS GRGDMAYGGR
901: LEATMRDKDY PIGRMLSTVA LSVVDWHGDL AIGCNIQSQI PAGRASNLVG HANLSNKGTG QVGIRLNSSE HLEIALVALV PIFQNIMKLL QNYSESG
101: HVEENAMGQS IREYVTAAVL ADRKKERLDK DHNFFATRDN KAEVAAQSGS EYEDVKDGTL VYQSKEQPGT STEDIASSHS RPGTVTHSAA EPAVAIEELD
201: DSSSSADENT ATSAPPAQFS SGSSTPAQSS SAASARSTNG PSLPSRPAGL GSSSSLSQPP ARSVQQVHAN RPAIVERGTQ GATEDDGDEN DEIHEKLQMI
301: RVKFLRLANR FGQTYHNMVV SQVLYRLGLA EQLRRTTSNG SFSIDRARDM AERLEAAGNA PLDFSCTILV LGKTGVGKSA TINSVFDDTR LDTNAFDSST
401: RKVQEVVGMV EGIKVKVIDT PGLSCSSLEQ HRNQKVLNSV KRLISKNPPD IVLYFDRLDM QSRDNCDVPL LQTITKVFGA SVWFNAIVVL THAASAPPDG
501: QNGIPLSYEM FVTQRSHVVQ QAIRQAAGDV RLMNPVSLVE NHSACRTNRA GQRVLPNGQV WKPQLLLLCF ASKVLAEANV LLKLQDSPIG KLSRTRIPPL
601: PFLLSSLLQS RAPLKLPEEQ FGGDDDDLED DLADDSDSDD GSDYDDLPPF KRLTKAQLAK LNREQRKAYL EELDYREKLF YQKQLKEERK RRKLMKKMAA
701: EASARANDFS NSNLEDDATT PTNVSVPMPD MVLPSSFDSD YPSHRYRFLD TPSEWLVRPV LETQGWDHDV GYEGLNVERL FAVKGKVPLS VSGQLTKDKK
801: DCSLQMEVAS SIKHAEGKTT SLGLDLQSVG RDMAYTIRGE SRFKNFRRNN TSAGISATLL GDSVSAGMKI EDKLIVNKQL RVLVSSGAMS GRGDMAYGGR
901: LEATMRDKDY PIGRMLSTVA LSVVDWHGDL AIGCNIQSQI PAGRASNLVG HANLSNKGTG QVGIRLNSSE HLEIALVALV PIFQNIMKLL QNYSESG
0001: MGDGAEIVTR LYGDEKKLAE DGRISELVGS DEVKDNEEEV FEEAIGSQEG LKPESLKTDV LQEDFPLASN DEVCDLEETS RNERGVENLK VNYSEIGESH
0101: GEVNEQCITT KEADSDLVTL KMNDYDHGEV ADADISYGKM ASSLDVVENS EKATSNLATE DVNLENGNTH SSSENGVVSP DENKELVAEV ISVSACSVET
0201: GSNGIDDEKW EEEIDVSAGM VTEQRNGKTG AEFNSVKIVS GDKSLNDSIE VAAGTLSPLE KSSSEEKGET ESQNSNGGHD IQSNKEIVKQ QDSSVNIGPE
0301: IKESQHMERE SEVLSSVSPT ESRSDTAALP PARPAGLGRA APLLEPAPRV TQQPRVNGNV SHNQPQQAED STTAETDEHD ETREKLQFIR VKFLRLSHRL
0401: GQTPHNVVVA QVLYRLGLAE QLRGRNGSRV GAFSFDRASA MAEQLEAAAQ DPLDFSCTIM VLGKSGVGKS ATINSIFDEL KISTDAFQVG TKKVQDIEGF
0501: VQGIKVRVID TPGLLPSWSD QHKNEKILKS VRAFIKKSPP DIVLYLDRLD MQSRDSGDMP LLRTITDVFG PSIWFNAIVG LTHAASAPPD GPNGTASSYD
0601: MFVTQRSHVI QQAIRQAAGD MRLMNPVSLV ENHSACRTNR AGQRVLPNGQ VWKPHLLLLS FASKILAEAN ALLKLQDNIP GGQFATRSKA PPLPLLLSSL
0701: LQSRPQAKLP EQQYDDEDDE DDLDESSDSE EESEYDELPP FKRLTKAEMT KLSKSQKKEY LDEMEYREKL FMKRQMKEER KRRKLLKKFA AEIKDMPNGY
0801: SENVEEERSE PASVPVPMPD LSLPASFDSD NPTHRYRYLD TSNQWLVRPV LETHGWDHDI GYEGVNAERL FVVKDKIPVS FSGQVTKDKK DAHVQLELAS
0901: SVKHGEGRST SLGFDMQNAG KELAYTIRSE TRFNKFRKNK AAAGLSVTLL GDSVSAGLKV EDKLIANKRF RMVMSGGAMT SRGDVAYGGT LEAQFRDKDY
1001: PLGRFLSTLG LSVMDWHGDL AIGGNIQSQV PIGRSSNLIA RANLNNRGAG QVSIRVNSSE QLQLAVVALV PLFKKLLTYY SPEQMQYGH
0101: GEVNEQCITT KEADSDLVTL KMNDYDHGEV ADADISYGKM ASSLDVVENS EKATSNLATE DVNLENGNTH SSSENGVVSP DENKELVAEV ISVSACSVET
0201: GSNGIDDEKW EEEIDVSAGM VTEQRNGKTG AEFNSVKIVS GDKSLNDSIE VAAGTLSPLE KSSSEEKGET ESQNSNGGHD IQSNKEIVKQ QDSSVNIGPE
0301: IKESQHMERE SEVLSSVSPT ESRSDTAALP PARPAGLGRA APLLEPAPRV TQQPRVNGNV SHNQPQQAED STTAETDEHD ETREKLQFIR VKFLRLSHRL
0401: GQTPHNVVVA QVLYRLGLAE QLRGRNGSRV GAFSFDRASA MAEQLEAAAQ DPLDFSCTIM VLGKSGVGKS ATINSIFDEL KISTDAFQVG TKKVQDIEGF
0501: VQGIKVRVID TPGLLPSWSD QHKNEKILKS VRAFIKKSPP DIVLYLDRLD MQSRDSGDMP LLRTITDVFG PSIWFNAIVG LTHAASAPPD GPNGTASSYD
0601: MFVTQRSHVI QQAIRQAAGD MRLMNPVSLV ENHSACRTNR AGQRVLPNGQ VWKPHLLLLS FASKILAEAN ALLKLQDNIP GGQFATRSKA PPLPLLLSSL
0701: LQSRPQAKLP EQQYDDEDDE DDLDESSDSE EESEYDELPP FKRLTKAEMT KLSKSQKKEY LDEMEYREKL FMKRQMKEER KRRKLLKKFA AEIKDMPNGY
0801: SENVEEERSE PASVPVPMPD LSLPASFDSD NPTHRYRYLD TSNQWLVRPV LETHGWDHDI GYEGVNAERL FVVKDKIPVS FSGQVTKDKK DAHVQLELAS
0901: SVKHGEGRST SLGFDMQNAG KELAYTIRSE TRFNKFRKNK AAAGLSVTLL GDSVSAGLKV EDKLIANKRF RMVMSGGAMT SRGDVAYGGT LEAQFRDKDY
1001: PLGRFLSTLG LSVMDWHGDL AIGGNIQSQV PIGRSSNLIA RANLNNRGAG QVSIRVNSSE QLQLAVVALV PLFKKLLTYY SPEQMQYGH
Arabidopsis Description
TOC120Translocase of chloroplast 120, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LUS2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.