Factsheet for Zm00001d032615_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 7
plasma membrane 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003612_P001
Zm00001d023857_P001
Zm00001d025453_P006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06950.1	Zm00001d003612_P001	AT5G16620.1	15829604
AT1G06950.1	Zm00001d023857_P001	AT5G16620.1	15829604
AT1G06950.1	Zm00001d025453_P006	AT5G16620.1	15829604
AT1G06950.1	Zm00001d003612_P001	AT5G16620.1	17535810
AT1G06950.1	Zm00001d023857_P001	AT5G16620.1	17535810
AT1G06950.1	Zm00001d025453_P006	AT5G16620.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91582	Sorghum	plastid	89.93	89.49
Os10t0492000-01	Rice	plastid	48.08	82.12
Zm00001d004430_P001	Maize	cytosol	7.6	80.21
TraesCS1D01G174900.1	Wheat	plastid	78.28	77.22
TraesCS1B01G182500.1	Wheat	plastid	78.18	77.04
TraesCS1A01G165800.1	Wheat	golgi	77.99	76.92
HORVU5Hr1G048520.1	Barley	cytosol	3.46	72.92
HORVU1Hr1G043940.3	Barley	plastid	77.1	72.58
TraesCS1D01G175000.1	Wheat	plastid	30.6	69.51
Os10t0492101-00	Rice	plastid	11.94	69.14
HORVU1Hr1G043900.4	Barley	plastid	30.5	69.13
TraesCS1B01G182400.1	Wheat	plastid	30.4	69.06
TraesCS1A01G165700.1	Wheat	plastid	30.31	68.83
GSMUA_Achr11P...	Banana	plastid	57.95	57.66
VIT_06s0004g07730.t01	Wine grape	plastid	54.2	54.52
KRH17141	Soybean	endoplasmic reticulum	53.31	54.22
KRH72787	Soybean	endoplasmic reticulum	52.91	53.87
CDY54889	Canola	plastid	52.62	53.14
Bra015538.1-P	Field mustard	plastid	52.62	53.14
CDY10236	Canola	plastid	52.62	53.03
CDX86508	Canola	plastid	52.81	52.81
AT1G06950.1	Thale cress	plastid	52.81	52.66
CDY15593	Canola	plastid	52.62	52.62
Bra030666.1-P	Field mustard	plastid	52.42	52.42
Solyc09g031780.2.1	Tomato	plastid	51.83	52.24
KRG98182	Soybean	plastid	48.77	49.9
KRH30145	Soybean	cytosol	5.73	45.67
CDY06840	Canola	cytosol, mitochondrion	3.85	41.05
CDX94311	Canola	cytosol	14.81	36.59

Protein Annotations

EnsemblPlants:Zm00001d032615_P002	EnsemblPlants:Zm00001d032615_T002	EnsemblPlantsGene:Zm00001d032615	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:TIC110	PANTHER:PTHR34935	PFAM:PF16940
ProteinID:ONM05563.1	SEG:seg	UniParc:UPI00084492A4	UniProt:A0A1D6KSB0	MapMan:23.1.3.2	:

Description

Protein TIC110 chloroplastic

Coordinates

chr1:+:232168913..232177906

Molecular Weight (calculated)

111127.0 Da

IEP (calculated)

5.248

GRAVY (calculated)

-0.205

Length

1013 amino acids

Sequence
(BLAST)

0001: MELALASAKP SPRAAGAFPP LIFSPLKPFP LLRFPPRRTA AAALRLRLRL RAAAADAGET SPGEEVFGAR RELTGIQPLV EALPPAARTA AELAVAAAAV
0101: AAGYGIGLRA GGGSRAVAVA GAAVLCAASV AGAAAVNSVV PEVAAVGLHN YVAGHDDPTN LDNGEVEAIA KKYGVSTQDD AFKAELCDLY ARYLYSVLPP
0201: GDEDLKGTEV QAIIKFKSAL GLDDVDAANM HMEIGRRIYR ERLETSDRDA DMEQRRASAF QKLIYVSNLV FGDASVFLLP WKRLFGVTDS QIDIAMRENA
0301: KNLYSVQLKS IGRGLDIGTL IEVRRAQLAY KLSDEIAAEM FREHAKQLVQ ENISSALDIL KSRIPDSLTQ AVEEVNIVIK FNSLLTTLSK HPEADNFARG
0401: LGPISLAGED DHDRRADDFK ILYKAYATEV LSDGIVDDKK LSPLNELRNI FGLGKREAEG ILSDAKAHIY RRTLAKSFNT ELASVHSKAA FLQTLCEKLQ
0501: FDPELASKMH EEIYRQKLQQ FVTDGELSKE EVEALMAFQV RLCIPQETVD AAHTEICGQL FEKVVKEAIA SVDGYNADRR EAVRKAAQSL NLKTEAVMTI
0601: FSKAVRKLFL SYIQRAKEAG NRIETAKELK KLISFNIVVV TELLADIKGE LSPVAETEAS SAASESEGED GEHEWESLDT LRKTRPDKEL KEKLRKSSQK
0701: EITLKDDIPL RDRAELYETY LMFCITGETT NVSFGTAIST KKDDSEFLML KQLGDILGLT RKEAQDVHIK FAEKAFVQQA EVILADGKLT EAKADQLAKI
0801: QKQVGLPTEH AQKIIKGITT TKLSSAIEAS VARGQIGIQQ VRGLKEANFQ LDSLIAEPQR ESIYRKTVEE LFSSGTGDFD EEEMYVKIPA DLIISSEKAK
0901: SIVQDIAKVR LENSLVQAIA LLRQKKRDDV LSSLNDMLAC DAAVPASRPL SWPTPGELDD LFAIYLKSIP KPEKLSRLQY LLGISNEKAN EMQYAASEGS
1001: LPVAAEEKEE LAF

Best Arabidopsis Sequence Match ( AT1G06950.1 )
(BLAST)

0001: MNPSLVTAIN APISPSPRSP LLSHFLPTLP HRFSKSECLS RRRYRVSFPR SSAASSDQLS VSTQAKNPGI HGNKKELTGL QPIVEKMTPP VRLATSAVVL
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF

Arabidopsis Description

TIC110Protein TIC110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LPR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.