Factsheet for Bra015538.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008608.1-P
Bra023577.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06950.1	Bra008608.1-P	AT5G16620.1	15829604
AT1G06950.1	Bra023577.1-P	AT5G16620.1	15829604
AT1G06950.1	Bra008608.1-P	AT5G16620.1	17535810
AT1G06950.1	Bra023577.1-P	AT5G16620.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54889	Canola	plastid	99.7	99.7
Bra030666.1-P	Field mustard	plastid	94.02	93.09
AT1G06950.1	Thale cress	plastid	90.93	89.76
CDY06840	Canola	cytosol, mitochondrion	6.98	73.68
KRH17141	Soybean	endoplasmic reticulum	68.99	69.48
KRH72787	Soybean	endoplasmic reticulum	68.3	68.84
VIT_06s0004g07730.t01	Wine grape	plastid	68.39	68.12
KRH30145	Soybean	cytosol	8.57	67.72
Solyc09g031780.2.1	Tomato	plastid	64.61	64.48
KRG98182	Soybean	plastid	63.11	63.94
GSMUA_Achr11P...	Banana	plastid	61.81	60.9
CDX94311	Canola	cytosol	23.63	57.8
Os10t0492000-01	Rice	plastid	33.6	56.83
HORVU5Hr1G048520.1	Barley	cytosol	2.59	54.17
TraesCS1D01G174900.1	Wheat	plastid	54.34	53.07
TraesCS1A01G165800.1	Wheat	golgi	54.14	52.87
TraesCS1B01G182500.1	Wheat	plastid	53.94	52.63
Zm00001d032615_P002	Maize	mitochondrion	53.14	52.62
OQU91582	Sorghum	plastid	53.34	52.55
HORVU1Hr1G043940.3	Barley	plastid	53.84	50.19
HORVU1Hr1G043900.4	Barley	plastid	20.94	46.98
TraesCS1D01G175000.1	Wheat	plastid	20.74	46.64
TraesCS1A01G165700.1	Wheat	plastid	20.54	46.19
TraesCS1B01G182400.1	Wheat	plastid	20.54	46.19
Zm00001d004430_P001	Maize	cytosol	4.39	45.83
Os10t0492300-01	Rice	plastid	18.54	43.56
Os10t0492101-00	Rice	plastid	5.88	33.71

Protein Annotations

EnsemblPlants:Bra015538.1	EnsemblPlants:Bra015538.1-P	EnsemblPlantsGene:Bra015538	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:TIC110	PANTHER:PTHR34935	PFAM:PF16940
SEG:seg	UniParc:UPI0002544F4F	UniProt:M4DGB5	MapMan:23.1.3.2	:	:

Description

AT1G06950 (E=0.0) ATTIC110, TIC110 | TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110)

Coordinates

chrA10:+:1175158..1179919

Molecular Weight (calculated)

110678.0 Da

IEP (calculated)

5.650

GRAVY (calculated)

-0.280

Length

1003 amino acids

Sequence
(BLAST)

0001: MNPTAINAPI SPSTRSPLLC HFLTPLPLRL SNSQSHTRRR YRASFPRCAA TPSEQPLVVS NKKELTGLQP IVEKMTPPVR LATSAVVLAA SLATGYGLGL
0101: RLMGSKNIAL GGAAVAGAAG GALVYALNSA VPEVAAIGLH NYVAEFEDPA SVTKEDIEKI ASRYGVNKGD EAFQAEICDI YCRYVTSVLP AEGQSLKGDE
0201: VEKIVKFKSA LGIDDPDAAS MHMEIGRRIF RQRLETGERE GDAEQRRAFM RLVYVSALVF GDAASFLLPW KRVLKVTDAQ VEIAIRENAK QLYAERLKLV
0301: GRDINVENLV DLRKAQLSFK LSDELAEELF REHTRTVAIE NITSALGVLK NRTRAVKSMS LVVEELEKVL EFNNLLVSLK SHSEAANFAR GVGPISLIGG
0401: ESDFERRMDD LKLLYRAYVT DALSSGRIEE NKLVAMSQLR NILGLGTREA EAISVDVTSK AYRKRLANAF SSGDLEAQDS KAKYLQKLCE ELHFDAQKAS
0501: AIHEDIYRQK LQQCVTDGEL SDDNVAALLR LRVMLCIPQQ TIEAAHAEIC GSIFEKVVRE AISSGVDGYD AETRKSVRKA AHGLRLSRET AMSIASKAVR
0601: RVFTNYIRRA RSAENRTESA KELKKMIAFN KLVVTEMVAD IKGESSDKEP EEPVQEKKEN GEDEEWGSLE SLRKTRPDKE LAEKMGKPGQ TEITLKDDLP
0701: DRDRIDLYKT YLLYCLTGEV TRIPFGAQIT TKRDDSEYLL LNQLGGILGL TSKEIVNIHV GLAEQAFRQQ AEVILADGQL TKARVEQLDE LQKEVGLPQP
0801: QAEKVIKNIT TTKMANAIET AVNQGRLNIK QIRELKEANV SLDSMIAVSL REKLFKKTVN DIFSSGTGEF DETEVYETIP SDLSIDVEKA KGVVHDLAQS
0901: RLSNSLIQAV ALLRQRNAKG VVSSLNDLLA CDKAVPAEPL SWEVSEELSD LYSIYSKSDP KPAPEKVSRL QYLLGIDDST ATALSEMEDG AFSSAAEEGN
1001: FVF

Best Arabidopsis Sequence Match ( AT1G06950.1 )
(BLAST)

0001: MNPSLVTAIN APISPSPRSP LLSHFLPTLP HRFSKSECLS RRRYRVSFPR SSAASSDQLS VSTQAKNPGI HGNKKELTGL QPIVEKMTPP VRLATSAVVL
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF

Arabidopsis Description

TIC110Protein TIC110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LPR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.