Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d003612_P001 | |
| Zm00001d023857_P001 | |
| Zm00001d025453_P006 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G048520.1 | Barley | cytosol | 36.46 | 72.92 |
| TraesCS1D01G175000.1 | Wheat | plastid | 52.08 | 11.21 |
| HORVU1Hr1G043900.4 | Barley | plastid | 52.08 | 11.19 |
| TraesCS1B01G182400.1 | Wheat | plastid | 50.0 | 10.76 |
| TraesCS1A01G165700.1 | Wheat | plastid | 50.0 | 10.76 |
| Os10t0492000-01 | Rice | plastid | 59.38 | 9.61 |
| Zm00001d032615_P002 | Maize | mitochondrion | 80.21 | 7.6 |
| OQU91582 | Sorghum | plastid | 77.08 | 7.27 |
| TraesCS1D01G174900.1 | Wheat | plastid | 59.38 | 5.55 |
| TraesCS1A01G165800.1 | Wheat | golgi | 59.38 | 5.55 |
| TraesCS1B01G182500.1 | Wheat | plastid | 59.38 | 5.54 |
| HORVU1Hr1G043940.3 | Barley | plastid | 58.33 | 5.2 |
| AT1G06950.1 | Thale cress | plastid | 46.88 | 4.43 |
| Bra015538.1-P | Field mustard | plastid | 45.83 | 4.39 |
| CDY54889 | Canola | plastid | 45.83 | 4.39 |
| CDY10236 | Canola | plastid | 45.83 | 4.38 |
| CDX86508 | Canola | plastid | 45.83 | 4.34 |
| VIT_06s0004g07730.t01 | Wine grape | plastid | 43.75 | 4.17 |
| CDY15593 | Canola | plastid | 43.75 | 4.15 |
| KRG98182 | Soybean | plastid | 42.71 | 4.14 |
| KRH72787 | Soybean | endoplasmic reticulum | 42.71 | 4.12 |
| Bra030666.1-P | Field mustard | plastid | 42.71 | 4.05 |
| KRH17141 | Soybean | endoplasmic reticulum | 41.67 | 4.02 |
| GSMUA_Achr11P... | Banana | plastid | 41.67 | 3.93 |
| Solyc09g031780.2.1 | Tomato | plastid | 40.62 | 3.88 |
| CDX94311 | Canola | cytosol | 12.5 | 2.93 |
| KRH30145 | Soybean | cytosol | 0.0 | 0.0 |
| Os10t0492101-00 | Rice | plastid | 0.0 | 0.0 |
| CDY06840 | Canola | cytosol, mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d004430_P001 | EnsemblPlants:Zm00001d004430_T001 | EnsemblPlantsGene:Zm00001d004430 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | InterPro:Actin_CS | InterPro:TIC110 | PANTHER:PTHR34935 |
| PFAM:PF16940 | ProteinID:ONM18892.1 | ScanProsite:PS00432 | UniParc:UPI000842EEEE | UniProt:A0A1D6EFC2 | MapMan:35.1 |
Description
Protein TIC110 chloroplastic
Coordinates
chr2:-:111460687..111461351
Molecular Weight (calculated)
10711.6 Da
IEP (calculated)
4.700
GRAVY (calculated)
-0.345
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MWISRAEYEE SGPAIVHRKD SLTQAVEEVN IVIKFNSLLT TLSKHPEADN FARGLGPISL AGEDDHDRRA DDLKILYKAY ATEVLSDGIV DDKKVI
0001: MNPSLVTAIN APISPSPRSP LLSHFLPTLP HRFSKSECLS RRRYRVSFPR SSAASSDQLS VSTQAKNPGI HGNKKELTGL QPIVEKMTPP VRLATSAVVL
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF
Arabidopsis Description
TIC110Protein TIC110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LPR9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.