Factsheet for TraesCS1D01G175000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G308600.4
TraesCS2B01G325100.2
TraesCS2D01G306800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06950.1	TraesCS2A01G308600.4	AT5G16620.1	15829604
AT1G06950.1	TraesCS2B01G325100.2	AT5G16620.1	15829604
AT1G06950.1	TraesCS2D01G306800.1	AT5G16620.1	15829604
AT1G06950.1	TraesCS2A01G308600.4	AT5G16620.1	17535810
AT1G06950.1	TraesCS2B01G325100.2	AT5G16620.1	17535810
AT1G06950.1	TraesCS2D01G306800.1	AT5G16620.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G182400.1	Wheat	plastid	97.53	97.53
TraesCS1A01G165700.1	Wheat	plastid	97.09	97.09
HORVU1Hr1G043900.4	Barley	plastid	96.86	96.64
Os10t0492101-00	Rice	plastid	21.3	54.29
Zm00001d004430_P001	Maize	cytosol	11.21	52.08
TraesCS1D01G174900.1	Wheat	plastid	73.54	31.94
Os10t0492000-01	Rice	plastid	41.48	31.2
Zm00001d032615_P002	Maize	mitochondrion	69.51	30.6
OQU91582	Sorghum	plastid	69.06	30.26
GSMUA_Achr11P...	Banana	plastid	53.59	23.48
VIT_06s0004g07730.t01	Wine grape	plastid	52.24	23.14
KRH72787	Soybean	endoplasmic reticulum	49.55	22.21
KRH17141	Soybean	endoplasmic reticulum	49.55	22.19
AT1G06950.1	Thale cress	plastid	49.55	21.75
CDY15593	Canola	plastid	48.88	21.52
CDX86508	Canola	plastid	48.65	21.42
Bra030666.1-P	Field mustard	plastid	48.65	21.42
Solyc09g031780.2.1	Tomato	plastid	48.21	21.39
CDY10236	Canola	plastid	47.31	21.0
KRG98182	Soybean	plastid	46.19	20.81
CDY54889	Canola	plastid	46.64	20.74
Bra015538.1-P	Field mustard	plastid	46.64	20.74
CDY06840	Canola	cytosol, mitochondrion	2.91	13.68
CDX94311	Canola	cytosol	9.42	10.24
KRH30145	Soybean	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1D01G175000.1	EnsemblPlantsGene:TraesCS1D01G175000	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	InterPro:TIC110	PANTHER:PTHR34935	PFAM:PF16940	SEG:seg
MapMan:23.1.3.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:249136670..249142777

Molecular Weight (calculated)

47344.0 Da

IEP (calculated)

6.808

GRAVY (calculated)

0.105

Length

446 amino acids

Sequence
(BLAST)

001: MELSLVSAKA SPRAAAAAAS SSPLLPSATR SRPRGRRFRC VAAASKGEEV FGGRKELTGV QPLVEALPPA GRAVLELAVV AAAAAGGYTL GTRYGGTRTT
101: AVAGAAVLGA ATLAGAAAVN SVVPEVAAVG LHNYVAGSDD PTALEASEVA AITSKYGVST QDAAFKSELC DLYASFVYSV LPPGHEALKG TEVEAIKKFK
201: KALGLDDVDA ANMHMAIGRR LYRERLDAFQ KLIFVSNLVF GDASDFILPW KHLFGITDYQ IDIAMRENAK ILYALELKSI GRGLDIGTLI EVRRVQLAYK
301: LFDEVAADMF KEHAKKLVQE NISSALSILK SNTSAGNIPT EVISEVNSIL AFNKLLTVLS KFPQGDRFAR GLGPISLAGD FDHDKMVGDL KILYAAYTTE
401: VLSDGRLDDE KLGPLNELRN IFGLGKREAE AIIEGVMSDV KSQVPA

Best Arabidopsis Sequence Match ( AT1G06950.1 )
(BLAST)

0001: MNPSLVTAIN APISPSPRSP LLSHFLPTLP HRFSKSECLS RRRYRVSFPR SSAASSDQLS VSTQAKNPGI HGNKKELTGL QPIVEKMTPP VRLATSAVVL
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF

Arabidopsis Description

TIC110Protein TIC110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LPR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.