Factsheet for Os10t0492000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

plastid: 17189339
vacuole: 18557835
plastid: 21433289
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0439900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06950.1	Os04t0439900-01	AT5G16620.1	15829604
AT1G06950.1	Os04t0439900-01	AT5G16620.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G048520.1	Barley	cytosol	6.24	77.08
Zm00001d004430_P001	Maize	cytosol	9.61	59.38
OQU91582	Sorghum	plastid	82.8	48.23
Zm00001d032615_P002	Maize	mitochondrion	82.12	48.08
TraesCS1B01G182500.1	Wheat	plastid	82.29	47.47
TraesCS1D01G174900.1	Wheat	plastid	82.12	47.42
TraesCS1A01G165800.1	Wheat	golgi	81.62	47.13
CDY06840	Canola	cytosol, mitochondrion	7.42	46.32
HORVU1Hr1G043940.3	Barley	plastid	82.12	45.26
KRH30145	Soybean	cytosol	9.27	43.31
TraesCS1D01G175000.1	Wheat	plastid	31.2	41.48
TraesCS1B01G182400.1	Wheat	plastid	30.52	40.58
TraesCS1A01G165700.1	Wheat	plastid	30.52	40.58
HORVU1Hr1G043900.4	Barley	plastid	30.52	40.49
Os10t0492300-01	Rice	plastid	27.99	38.88
KRH72787	Soybean	endoplasmic reticulum	59.87	35.68
GSMUA_Achr11P...	Banana	plastid	60.71	35.36
KRH17141	Soybean	endoplasmic reticulum	59.02	35.14
VIT_06s0004g07730.t01	Wine grape	plastid	59.36	34.96
Solyc09g031780.2.1	Tomato	plastid	58.01	34.23
CDY54889	Canola	plastid	56.83	33.6
Bra015538.1-P	Field mustard	plastid	56.83	33.6
AT1G06950.1	Thale cress	plastid	57.5	33.56
CDY10236	Canola	plastid	56.83	33.53
CDY15593	Canola	plastid	57.0	33.37
CDX86508	Canola	plastid	57.0	33.37
Bra030666.1-P	Field mustard	plastid	56.66	33.17
CDX94311	Canola	cytosol	22.77	32.93
KRG98182	Soybean	plastid	53.12	31.82
Os10t0492101-00	Rice	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Os10t0492000-01	EnsemblPlantsGene:Os10g0492000	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	InterPro:TIC110	PANTHER:PTHR34935	PFAM:PF16940	ProteinID:BAT11436.1
UniParc:UPI000393AD53	UniProt:A0A0P0XWA7	MapMan:23.1.3.2	:	:	:

Description

Conserved hypothetical protein. (Os10t0492000-01)

Coordinates

chr10:-:18670868..18676503

Molecular Weight (calculated)

66822.9 Da

IEP (calculated)

5.546

GRAVY (calculated)

-0.418

Length

593 amino acids

Sequence
(BLAST)

001: LDDVDAANMH MEIGRRIYRE RLETRDRDAD MEQRRAFQKL IYVSNLVFGD ASTFLLPWKR LFGVTDSQID IAMRENAKIL YASQLKSIGR GLDIGTLIEV
101: RRAQLAYKLS DEIAAEMFKE HAKKLVQENI SSALDIVKSR TKAANSPTQV IEDVKSILAF NSLLITLSKH PDQDRFIRGL GPISLGGESD HDRRADDLKL
201: LYRAYATEVL SDGHLDDEKL APLNQLRNIF GLGKREAESI MSDVKAQVYR KRLAKSFNSE LAAAPSKAAF LQNICEELQF DPELASKMHE DIYRQKLQQF
301: VADGELNKDE VEALMAFQVR LCIPQETVDA VHSEICGKLF EKVVVEAISS VDGYDTNRRQ AVKKAAQGLN LKNESVMAIF SKVVRKLFLN YIQRAKAAGN
401: RIETAKELKK MISFNTVVVS ELLADIKGEP TTAEPQTSDA TSEPEVSESE GDDEYEWEQL ETLRKTRPDK ELREKLAKSS QKEITLKDDI PLRDRAELYE
501: TYLVFCVTGE TTNVSFGTAI STKKDNSEYL MLKQLGDILG LTRKEAQNVH IKMAEKAFVQ QAEVILADGK LTEAKADQLA KIQKQVGLPT EYA

Best Arabidopsis Sequence Match ( AT1G06950.1 )
(BLAST)

0001: MNPSLVTAIN APISPSPRSP LLSHFLPTLP HRFSKSECLS RRRYRVSFPR SSAASSDQLS VSTQAKNPGI HGNKKELTGL QPIVEKMTPP VRLATSAVVL
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF

Arabidopsis Description

TIC110Protein TIC110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LPR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.