Factsheet for TraesCS1D01G174900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 16595579
plastid: 18071923
plastid: 18419817
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 18071923 doi

LA Blomqvist, M Ryberg, C Sundqvist

Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G308600.4
TraesCS2B01G325100.2
TraesCS2D01G306800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06950.1	TraesCS2A01G308600.4	AT5G16620.1	15829604
AT1G06950.1	TraesCS2B01G325100.2	AT5G16620.1	15829604
AT1G06950.1	TraesCS2D01G306800.1	AT5G16620.1	15829604
AT1G06950.1	TraesCS2A01G308600.4	AT5G16620.1	17535810
AT1G06950.1	TraesCS2B01G325100.2	AT5G16620.1	17535810
AT1G06950.1	TraesCS2D01G306800.1	AT5G16620.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G165800.1	Wheat	golgi	96.98	96.98
TraesCS1B01G182500.1	Wheat	plastid	96.49	96.4
HORVU5Hr1G048520.1	Barley	cytosol	4.48	95.83
HORVU1Hr1G043940.3	Barley	plastid	94.55	90.24
Os10t0492000-01	Rice	plastid	47.42	82.12
OQU91582	Sorghum	plastid	77.9	78.59
Zm00001d032615_P002	Maize	mitochondrion	77.22	78.28
TraesCS1D01G175000.1	Wheat	plastid	31.94	73.54
Os10t0492101-00	Rice	plastid	11.68	68.57
Zm00001d004430_P001	Maize	cytosol	5.55	59.38
GSMUA_Achr11P...	Banana	plastid	58.81	59.33
KRH72787	Soybean	endoplasmic reticulum	55.99	57.79
VIT_06s0004g07730.t01	Wine grape	plastid	56.18	57.3
KRH17141	Soybean	endoplasmic reticulum	55.5	57.23
KRH30145	Soybean	cytosol	7.01	56.69
CDY15593	Canola	plastid	53.94	54.69
CDX86508	Canola	plastid	53.85	54.59
CDY10236	Canola	plastid	53.36	54.53
Bra030666.1-P	Field mustard	plastid	53.75	54.49
CDY54889	Canola	plastid	53.07	54.34
Bra015538.1-P	Field mustard	plastid	53.07	54.34
AT1G06950.1	Thale cress	plastid	53.75	54.33
Solyc09g031780.2.1	Tomato	plastid	52.68	53.83
KRG98182	Soybean	plastid	51.02	52.93
CDY06840	Canola	cytosol, mitochondrion	4.58	49.47
CDX94311	Canola	cytosol	15.38	38.54

Protein Annotations

EnsemblPlants:TraesCS1D01G174900.1	EnsemblPlantsGene:TraesCS1D01G174900	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	InterPro:TIC110	PANTHER:PTHR34935	PFAM:PF16940	SEG:seg
MapMan:23.1.3.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:249023215..249031798

Molecular Weight (calculated)

112629.0 Da

IEP (calculated)

5.369

GRAVY (calculated)

-0.277

Length

1027 amino acids

Sequence
(BLAST)

0001: MELSLVSARP LPRAAASPLL FAPLKPLPLL RFPPRKRTAF ARLRSRRSRR VAASGEGEGD AADRDEEVFG GRSEQVFGGR RELTGVQPLV EALPPVARTA
0101: AELAVAAAAL AAGYGIGLRA GGGNRAAAFA GAAVLGGASV AAAVAVNSVV PEVAAVGLHN YVAGHDDPTK LEASEVEAIA NKYGVSTQDA AFKTELCDLY
0201: GSFLYSVLPP GDEDLKGDEV EVIAKFKRGL GLDDVDAANM HMEIGRRLYR ERLETRDRDA DIEQRRAFQK LIYVSNLVFG DASAFLLPWK RLFGITDSQI
0301: DIAMRDNAKN LYAIQLKSIG RGLDIGTLIE VRRAQLACKL SDEIAADMFR EHAKKLIQEN ISSALDILKS RNKATNSPTQ VIEEVKCVLA FNSLLTVLSK
0401: HPQGDRFARG LGPISLAGEL DHDRRAGDLK TLYRAYATDV LSDGPVDNEK LTPLNDLRNI FGLGKREAEA IISDVKSQAY RKRLAKSFNT DLAAAPSKAS
0501: FLQNLCEELQ FDPELASKMH EDIYRQKLQQ FVADGELSKD ETEALMAFQV RLCIPQETVD AAHTDICGQL FEKVVKEAIL SVDGYNADRR EAVRKAAQSL
0601: NLKKEAAMTI FSKAVRKLFL NYIQKAKAAG NRIEQAKELK KLISFNTVVV SELLADIKGE LTTAEPATSS ATSEPETTES EGEDEDYEWE SLETLKKTRP
0701: DKELKEKLGK SSQKEISLKD DLPLRDRAEL YQTYLMFCIT GETTNVSFGT AISSKKDDSE YLMLKQLGRI LGLTAKEAQD VHIKLAEKAF VQQAEVVLAD
0801: GKLTESKADQ LATIQKQVGL PSEHAQKIIK SITTTKLSSA IEASISRGQI GIQQVRGLKD ANFELDSLIS EPLRETIYKK CAEEIFSSGT GEFDEEEVYV
0901: KMPADLIISA EKARSIVQDI AKVRLENALV QAVALLRQKK RDGVISSLND LLACDAAVPA SKPLSWPTPR ELDDLYCVYM KSIPKQDKLS RLQYLLDISA
1001: EKAEDLRDAA TAGTLPQTGQ EEEELAF

Best Arabidopsis Sequence Match ( AT1G06950.1 )
(BLAST)

0001: MNPSLVTAIN APISPSPRSP LLSHFLPTLP HRFSKSECLS RRRYRVSFPR SSAASSDQLS VSTQAKNPGI HGNKKELTGL QPIVEKMTPP VRLATSAVVL
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF

Arabidopsis Description

TIC110Protein TIC110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LPR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.