Factsheet for TraesCS2A01G308600.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G165700.1
TraesCS1A01G165800.1
TraesCS1B01G182400.1
TraesCS1B01G182500.1
TraesCS1D01G174900.1
TraesCS1D01G175000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16620.1	TraesCS1A01G165700.1	AT1G06950.1	17535810
AT5G16620.1	TraesCS1A01G165800.1	AT1G06950.1	17535810
AT5G16620.1	TraesCS1B01G182400.1	AT1G06950.1	17535810
AT5G16620.1	TraesCS1B01G182500.1	AT1G06950.1	17535810
AT5G16620.1	TraesCS1D01G174900.1	AT1G06950.1	17535810
AT5G16620.1	TraesCS1D01G175000.1	AT1G06950.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G325100.2	Wheat	plastid	98.82	98.82
TraesCS2D01G306800.1	Wheat	plastid	95.53	95.98
HORVU2Hr1G076790.7	Barley	plastid	96.0	95.77
Os04t0439900-01	Rice	plastid	80.94	80.19
EES12206	Sorghum	plastid	78.59	76.61
Zm00001d025453_P006	Maize	plastid	76.24	72.0
Zm00001d023857_P001	Maize	plastid	28.24	70.18
Zm00001d003612_P001	Maize	plastid	47.53	66.45
GSMUA_Achr11P...	Banana	plastid	35.53	52.07
PGSC0003DMT400059853	Potato	nucleus, plastid	36.24	50.83
GSMUA_Achr8P16240_001	Banana	nucleus	34.12	50.0
KRH30716	Soybean	endoplasmic reticulum	49.18	48.72
KRG98060	Soybean	endoplasmic reticulum	49.18	48.38
VIT_18s0041g01360.t01	Wine grape	plastid	49.18	47.94
Solyc11g020300.1.1	Tomato	plastid	46.12	44.24
CDX85495	Canola	plastid	46.35	43.78
CDX69438	Canola	plastid	46.82	43.54
Bra008608.1-P	Field mustard	plastid	46.82	43.54
AT5G16620.1	Thale cress	plastid	45.65	43.4
CDY38098	Canola	plastid	45.41	42.89
CDY49648	Canola	plastid	44.71	41.76
Bra023577.1-P	Field mustard	plastid	33.88	37.31

Protein Annotations

EnsemblPlants:TraesCS2A01G308600.4	EnsemblPlantsGene:TraesCS2A01G308600	Gene3D:1.10.260.100	InterPro:STI1_HS-bd	PANTHER:PTHR22904	PANTHER:PTHR22904:SF490
SEG:seg	SMART:SM00727	MapMan:23.1.3.3	:	:	:

Description

No Description!

Coordinates

chr2A:-:530745418..530751345

Molecular Weight (calculated)

45724.0 Da

IEP (calculated)

5.006

GRAVY (calculated)

-0.422

Length

425 amino acids

Sequence
(BLAST)

001: MESLVLASSC SASPRLPLLS AASRPSRPLP AAPLSAAAGR RGARRPRLVV SAASRGSRNV SDGFNTKGFA SISSSTSTEN TSTGTGTVPP MPPPSSYIGS
101: PVFWIGVGVA LSAAFSMVSS MVKKYAMEQA FKSMMTQAPP NTFGANSPFP FSMPPQAGST APSSYPYSGP RKNTPKGATV DVSATDVAAT GSSEAADVAE
201: TSKPSKKFAF VDVSPEELQK QKELQSSLQT VDVKSDSTES ETKGDTEQVP TNGAAFKPSE DSSTWTTESS KSGPMLSIDT IEKMMEDPAV QKMVYPYLPE
301: EMRNPDSFKS MLQNPMYRQQ LEDMLNNMGA SPDQWDNRMV DHLKNFDLSS PEVRQQFAQV GMTPEEVVAK IMANPEVAVA FQNPKIQTAI MDCSQNPLNI
401: VKYQNDQEVM DVFMKISQIF PQING

Best Arabidopsis Sequence Match ( AT5G16620.1 )
(BLAST)

001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Arabidopsis Description

TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.