CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
plastid 4
cytosol 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98182
KRH17141
KRH30145
KRH72787

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16620.1	KRG98182	AT1G06950.1	17535810
AT5G16620.1	KRH17141	AT1G06950.1	17535810
AT5G16620.1	KRH30145	AT1G06950.1	17535810
AT5G16620.1	KRH72787	AT1G06950.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30716	Soybean	endoplasmic reticulum	94.91	95.57
PGSC0003DMT400059853	Potato	nucleus, plastid	46.06	65.68
VIT_18s0041g01360.t01	Wine grape	plastid	64.58	63.99
GSMUA_Achr8P16240_001	Banana	nucleus	40.51	60.34
GSMUA_Achr11P...	Banana	plastid	39.58	58.97
Solyc11g020300.1.1	Tomato	plastid	59.26	57.79
CDY38098	Canola	plastid	56.48	54.22
AT5G16620.1	Thale cress	plastid	55.79	53.91
CDX85495	Canola	plastid	55.56	53.33
Bra008608.1-P	Field mustard	plastid	56.25	53.17
CDX69438	Canola	plastid	56.25	53.17
Os04t0439900-01	Rice	plastid	50.46	50.82
CDY49648	Canola	plastid	53.47	50.77
TraesCS2A01G308600.4	Wheat	plastid	48.38	49.18
TraesCS2B01G325100.2	Wheat	plastid	48.38	49.18
HORVU2Hr1G076790.7	Barley	plastid	48.38	49.06
TraesCS2D01G306800.1	Wheat	plastid	47.69	48.7
Zm00001d025453_P006	Maize	plastid	49.77	47.78
EES12206	Sorghum	plastid	48.15	47.71
Bra023577.1-P	Field mustard	plastid	42.36	47.41
Zm00001d023857_P001	Maize	plastid	15.28	38.6
Zm00001d003612_P001	Maize	plastid	26.62	37.83

Protein Annotations

EMBL:ACUP02010840	EnsemblPlants:KRG98060	EnsemblPlantsGene:GLYMA_18G048200	EntrezGene:100790904	Gene3D:1.10.260.100	Gene3D:3.40.190.140
InterPro:IPR038108	InterPro:RPN13_C_sf	InterPro:STI1_HS-bd	PANTHER:PTHR22904	PANTHER:PTHR22904:SF490	ProteinID:KRG98060
ProteinID:KRG98060.1	SEG:seg	SMART:SM00727	UniParc:UPI000233F5A2	UniProt:K7MPZ2	MapMan:23.1.3.3

Description

hypothetical protein

Coordinates

chr18:-:4165713..4174138

Molecular Weight (calculated)

47363.2 Da

IEP (calculated)

6.387

GRAVY (calculated)

-0.422

Length

432 amino acids

Sequence
(BLAST)

001: MEKLNLALVS SPKPLMLGHV PAIDATSRDV FRRKHFSFGR VLIAPHRCRF RVSALSSSHR NPKSVQEKLI VKHFASISSS NTQEATSTGV NPQLSPSSTI
101: GSPLFWIGVG VGLSALFSVV ASRLKKYAMQ QAFKTMMGQM NSQNNQFGNA AFSPGSPFPF PMPTAAGPTA PASSATTQSR APSASSASQS TITVDIPAAK
201: VEVAPTTNVK DEVEVKNEPK KIAFVDVSPE ETVQESPFES FKDDESSSVK EARVPDEVSQ NGAPSNQGFG DFPGSQSTKK SVLSVDALEK MMEDPTVQKM
301: VYPYLPEEMR NPTTFKWMLQ NPQYRQQLEE MLNNMGGSTE WDSRMMDTLK NFDLNSPEVK QQFDQIGLSP EEVISKIMAN PEVAMAFQNP RVQAAIMDCS
401: QNPMNITKYQ NDKEVMDVFN KISELFPGVG SP

Best Arabidopsis Sequence Match ( AT5G16620.1 )
(BLAST)

001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Arabidopsis Description

TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.