Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- cytosol 1
- nucleus 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G06950.1 | KRG98060 | AT5G16620.1 | 15829604 |
| AT1G06950.1 | KRH30716 | AT5G16620.1 | 15829604 |
| AT1G06950.1 | KRG98060 | AT5G16620.1 | 17535810 |
| AT1G06950.1 | KRH30716 | AT5G16620.1 | 17535810 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH30145 | Soybean | cytosol | 9.9 | 77.17 |
| KRH17141 | Soybean | endoplasmic reticulum | 77.47 | 77.01 |
| KRH72787 | Soybean | endoplasmic reticulum | 76.16 | 75.78 |
| VIT_06s0004g07730.t01 | Wine grape | plastid | 70.4 | 69.22 |
| Solyc09g031780.2.1 | Tomato | plastid | 64.95 | 63.98 |
| CDY10236 | Canola | plastid | 64.24 | 63.28 |
| CDY54889 | Canola | plastid | 64.04 | 63.21 |
| CDX86508 | Canola | plastid | 64.65 | 63.18 |
| Bra015538.1-P | Field mustard | plastid | 63.94 | 63.11 |
| AT1G06950.1 | Thale cress | plastid | 64.75 | 63.09 |
| CDY15593 | Canola | plastid | 64.55 | 63.08 |
| Bra030666.1-P | Field mustard | plastid | 64.55 | 63.08 |
| GSMUA_Achr11P... | Banana | plastid | 63.33 | 61.59 |
| Os10t0492000-01 | Rice | plastid | 31.82 | 53.12 |
| CDY06840 | Canola | cytosol, mitochondrion | 5.05 | 52.63 |
| HORVU5Hr1G048520.1 | Barley | cytosol | 2.53 | 52.08 |
| TraesCS1D01G174900.1 | Wheat | plastid | 52.93 | 51.02 |
| TraesCS1A01G165800.1 | Wheat | golgi | 52.93 | 51.02 |
| TraesCS1B01G182500.1 | Wheat | plastid | 52.93 | 50.97 |
| OQU91582 | Sorghum | plastid | 51.11 | 49.71 |
| HORVU1Hr1G043940.3 | Barley | plastid | 53.03 | 48.79 |
| Zm00001d032615_P002 | Maize | mitochondrion | 49.9 | 48.77 |
| TraesCS1D01G175000.1 | Wheat | plastid | 20.81 | 46.19 |
| HORVU1Hr1G043900.4 | Barley | plastid | 20.81 | 46.09 |
| TraesCS1B01G182400.1 | Wheat | plastid | 20.51 | 45.52 |
| TraesCS1A01G165700.1 | Wheat | plastid | 20.51 | 45.52 |
| CDX94311 | Canola | cytosol | 18.38 | 44.39 |
| Zm00001d004430_P001 | Maize | cytosol | 4.14 | 42.71 |
| Os10t0492300-01 | Rice | plastid | 17.88 | 41.45 |
| Os10t0492101-00 | Rice | plastid | 5.05 | 28.57 |
Protein Annotations
| EMBL:ACUP02010850 | EnsemblPlants:KRG98182 | EnsemblPlantsGene:GLYMA_18G055700 | EntrezGene:100819780 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | InterPro:TIC110 | PANTHER:PTHR34935 |
| PFAM:PF16940 | ProteinID:KRG98182 | ProteinID:KRG98182.1 | SEG:seg | UniParc:UPI000233E990 | UniProt:I1MZT5 |
| MapMan:23.1.3.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr18:-:4853564..4860560
Molecular Weight (calculated)
109473.0 Da
IEP (calculated)
5.244
GRAVY (calculated)
-0.208
Length
990 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPSHTLIPS SHCYPPLLPF TFATLCTSQR RRFRVFFPRC FSATSAPPQV PKDLCGIEHL VDKLSPPVRL ATSVVVFAAA ASAGYGLGSK LGGCQNVAIG
101: GAVAFGVAGT AAAYALNAVA PQVAAVNLHN YVVGLDNPFL LKKEDIDGIS NRYGVSKQDD AFKAEICDIY SHFVSSLLPP GDVELKGDEA DKIISFKNSL
201: GIDDPDAAAM HIEVGRNIFR QRLEVGDCEA DIEQYRAFQK LIYMSYLVFG EASSFLLPWK HVFKVTDSQV EEAIRDNAQR LYASKLKSVG RDIDAEQLVT
301: LREAQHLYCL SDQLAENLFK EHTRKLVEGS ISVAHGILKS HTRSVYGVIE AVEELDSVLA FNNILISLKN HPDVDHFAQG VGPVSLLGGE YDGDRKIEDL
401: KLLYRAYIAN ALSSGRMEDN KVAALNLLRK FFGLGKREAE AIMLDVTSRV YRKKLAQAVS GGSLEMTDSK ETFLQKLCDE LHFDPQKACE IHEEIYRQKL
501: QQLVADGELS DKDAAALLRL GVMLCIPQQT IDTAHSDICG SLFEKVVKDA IASGVDGNGA EMRKSVRKAA HGLRLTGDTA MSIASKTVRK IFINYIKRAR
601: AAGNCTESAK ELKKMIAFNT LVVTELVNDI KGESDDESTE EPGKDDVIQT EDEEWDSLQT LKKIRQNKEL EAKLGNLSHT EITLIDDLSE RDRTDLYKIY
701: LLFCLTGEET RVPFGAQITA KKDDSEYVLL NQLGGILGLS GKEIVEVHRS LAEQAFRQQA EVILVDGQLT KARVEQLNNL QNQVGLPQEY SQKIINSITT
801: TKMAAAIETA VTQGKLSIKQ IRELKEASVE IDNMVSEDLR ETLFKKTVGD IFSSGTGEFD EEEVYERIPL DLNINKEKAR GVVLELAETR LSNSLIQAVA
901: LLRQRNREGV VSSLNNMLAC DKAVPSRPHS WGVQEELADL YTIYMKSNAT PEKLSRLQYL LGINDSTAAS LREMGERLLS NNAEVEEFVF
101: GAVAFGVAGT AAAYALNAVA PQVAAVNLHN YVVGLDNPFL LKKEDIDGIS NRYGVSKQDD AFKAEICDIY SHFVSSLLPP GDVELKGDEA DKIISFKNSL
201: GIDDPDAAAM HIEVGRNIFR QRLEVGDCEA DIEQYRAFQK LIYMSYLVFG EASSFLLPWK HVFKVTDSQV EEAIRDNAQR LYASKLKSVG RDIDAEQLVT
301: LREAQHLYCL SDQLAENLFK EHTRKLVEGS ISVAHGILKS HTRSVYGVIE AVEELDSVLA FNNILISLKN HPDVDHFAQG VGPVSLLGGE YDGDRKIEDL
401: KLLYRAYIAN ALSSGRMEDN KVAALNLLRK FFGLGKREAE AIMLDVTSRV YRKKLAQAVS GGSLEMTDSK ETFLQKLCDE LHFDPQKACE IHEEIYRQKL
501: QQLVADGELS DKDAAALLRL GVMLCIPQQT IDTAHSDICG SLFEKVVKDA IASGVDGNGA EMRKSVRKAA HGLRLTGDTA MSIASKTVRK IFINYIKRAR
601: AAGNCTESAK ELKKMIAFNT LVVTELVNDI KGESDDESTE EPGKDDVIQT EDEEWDSLQT LKKIRQNKEL EAKLGNLSHT EITLIDDLSE RDRTDLYKIY
701: LLFCLTGEET RVPFGAQITA KKDDSEYVLL NQLGGILGLS GKEIVEVHRS LAEQAFRQQA EVILVDGQLT KARVEQLNNL QNQVGLPQEY SQKIINSITT
801: TKMAAAIETA VTQGKLSIKQ IRELKEASVE IDNMVSEDLR ETLFKKTVGD IFSSGTGEFD EEEVYERIPL DLNINKEKAR GVVLELAETR LSNSLIQAVA
901: LLRQRNREGV VSSLNNMLAC DKAVPSRPHS WGVQEELADL YTIYMKSNAT PEKLSRLQYL LGINDSTAAS LREMGERLLS NNAEVEEFVF
0001: MNPSLVTAIN APISPSPRSP LLSHFLPTLP HRFSKSECLS RRRYRVSFPR SSAASSDQLS VSTQAKNPGI HGNKKELTGL QPIVEKMTPP VRLATSAVVL
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF
Arabidopsis Description
TIC110Protein TIC110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LPR9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.