Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G308600.4 | |
| TraesCS2B01G325100.2 | |
| TraesCS2D01G306800.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G165800.1 | Wheat | golgi | 97.76 | 97.86 |
| TraesCS1D01G174900.1 | Wheat | plastid | 96.4 | 96.49 |
| HORVU5Hr1G048520.1 | Barley | cytosol | 4.47 | 95.83 |
| HORVU1Hr1G043940.3 | Barley | plastid | 95.82 | 91.54 |
| Os10t0492000-01 | Rice | plastid | 47.47 | 82.29 |
| OQU91582 | Sorghum | plastid | 77.53 | 78.29 |
| Zm00001d032615_P002 | Maize | mitochondrion | 77.04 | 78.18 |
| TraesCS1B01G182400.1 | Wheat | plastid | 31.91 | 73.54 |
| Os10t0492101-00 | Rice | plastid | 12.26 | 72.0 |
| Zm00001d004430_P001 | Maize | cytosol | 5.54 | 59.38 |
| GSMUA_Achr11P... | Banana | plastid | 58.75 | 59.33 |
| KRH72787 | Soybean | endoplasmic reticulum | 55.64 | 57.49 |
| KRH30145 | Soybean | cytosol | 7.1 | 57.48 |
| VIT_06s0004g07730.t01 | Wine grape | plastid | 55.93 | 57.1 |
| KRH17141 | Soybean | endoplasmic reticulum | 55.16 | 56.93 |
| CDX86508 | Canola | plastid | 53.6 | 54.39 |
| CDY15593 | Canola | plastid | 53.5 | 54.29 |
| CDY10236 | Canola | plastid | 53.02 | 54.23 |
| Bra030666.1-P | Field mustard | plastid | 53.31 | 54.1 |
| CDY54889 | Canola | plastid | 52.63 | 53.94 |
| Bra015538.1-P | Field mustard | plastid | 52.63 | 53.94 |
| AT1G06950.1 | Thale cress | plastid | 53.31 | 53.94 |
| Solyc09g031780.2.1 | Tomato | plastid | 52.53 | 53.73 |
| KRG98182 | Soybean | plastid | 50.97 | 52.93 |
| CDY06840 | Canola | cytosol, mitochondrion | 4.57 | 49.47 |
| CDX94311 | Canola | cytosol | 15.47 | 38.78 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G182500.1 | EnsemblPlantsGene:TraesCS1B01G182500 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009507 | GO:GO:0009536 | InterPro:TIC110 | PANTHER:PTHR34935 | PFAM:PF16940 | SEG:seg |
| MapMan:23.1.3.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:329478217..329487740
Molecular Weight (calculated)
112801.0 Da
IEP (calculated)
5.569
GRAVY (calculated)
-0.278
Length
1028 amino acids
Sequence
(BLAST)
(BLAST)
0001: MELSLVSARP LPRAAASPLL FAPLKPLPLL RFPPRKRTAF ARLRSRRSRR VAASGEGEGD AADRDEEVFG GRSEQVFGGR RELTGVQPLV EALPPVARTA
0101: AELAVAVAAV AAGYGIGLRA GGGNRAAAFA GAAVLGGASV AAAVAVNSVV PEVAAVGLHN YVAGHDDPTK LEASEVEAIA NKYGVSTQDA AFKTELCDLY
0201: GSFLYSVLPP GDEDLKGNEV EVIAKFKRGL GLDDVDAANM HMEIGRRLYR ERLETRDRDA DIEQRRAFQK LIYVSNLVFG DASAFLLPWK RLFGITDSQI
0301: DIAMRDNAKN LYAIQLKSIG RGLDIGTLIE VRRAQLACKL SDEIAADMFR EHAKKLIQEN ISSALDILKS RNKATNSPTQ VIEEVKCVLA FNSLLTVLSK
0401: HPQGDRFARG LGPISLAGEH DHDRRAGDLK TLYRAYATDV LSDGPVDNEK LTPLNDLRNI FGLGKREAEA IISDVKSQAY RKRLAKSFNT DLAAAPSKAS
0501: FLQNLCEELQ FDPELASKMH EDIYRQKLQQ FVADGELSKD ETEALMAFQV RLCIPQETVD AAHTDICGQL FEKVVKEAIL SVDGYNADRR EAVRKAAQGL
0601: NLKKEAAMTI FSKAVRKLFL NYIQKAKAAG NRIEQAKELK KLISFNTVVV SELLADIKGE VTTAEPATSS ATTEPETTES EGEDEDYEWE SLETLKKTRP
0701: DKELKEKLGK ASQKEITLKD DLPLRDRAEL YQTYLMFCIT GETTNVSFGT AISSKKDDSE YLMLKQLGHI LGLTRKEAQD VHIKLAEKAF VQQAEVVLAD
0801: GKLTESKADQ LATIQKQVGL PSEHAQKIIK SITTTKLSSA IEASISRGQI GIQQVRGLKD ANFELDSLIS EPLRETIYKK CAEEIFSSGT GEFDEEEVYV
0901: KMPADLIISA EKARSIVQDI AKVRLENALV QAVALLRQKK RDGVISSLND LLACDAAVPA SKPLSWPTPR ELDDLYCVYM KSIPKQDKLS RLQYLLDISA
1001: EKAEDLRDAA TAGMLPQTAG QEEEELAF
0101: AELAVAVAAV AAGYGIGLRA GGGNRAAAFA GAAVLGGASV AAAVAVNSVV PEVAAVGLHN YVAGHDDPTK LEASEVEAIA NKYGVSTQDA AFKTELCDLY
0201: GSFLYSVLPP GDEDLKGNEV EVIAKFKRGL GLDDVDAANM HMEIGRRLYR ERLETRDRDA DIEQRRAFQK LIYVSNLVFG DASAFLLPWK RLFGITDSQI
0301: DIAMRDNAKN LYAIQLKSIG RGLDIGTLIE VRRAQLACKL SDEIAADMFR EHAKKLIQEN ISSALDILKS RNKATNSPTQ VIEEVKCVLA FNSLLTVLSK
0401: HPQGDRFARG LGPISLAGEH DHDRRAGDLK TLYRAYATDV LSDGPVDNEK LTPLNDLRNI FGLGKREAEA IISDVKSQAY RKRLAKSFNT DLAAAPSKAS
0501: FLQNLCEELQ FDPELASKMH EDIYRQKLQQ FVADGELSKD ETEALMAFQV RLCIPQETVD AAHTDICGQL FEKVVKEAIL SVDGYNADRR EAVRKAAQGL
0601: NLKKEAAMTI FSKAVRKLFL NYIQKAKAAG NRIEQAKELK KLISFNTVVV SELLADIKGE VTTAEPATSS ATTEPETTES EGEDEDYEWE SLETLKKTRP
0701: DKELKEKLGK ASQKEITLKD DLPLRDRAEL YQTYLMFCIT GETTNVSFGT AISSKKDDSE YLMLKQLGHI LGLTRKEAQD VHIKLAEKAF VQQAEVVLAD
0801: GKLTESKADQ LATIQKQVGL PSEHAQKIIK SITTTKLSSA IEASISRGQI GIQQVRGLKD ANFELDSLIS EPLRETIYKK CAEEIFSSGT GEFDEEEVYV
0901: KMPADLIISA EKARSIVQDI AKVRLENALV QAVALLRQKK RDGVISSLND LLACDAAVPA SKPLSWPTPR ELDDLYCVYM KSIPKQDKLS RLQYLLDISA
1001: EKAEDLRDAA TAGMLPQTAG QEEEELAF
0001: MNPSLVTAIN APISPSPRSP LLSHFLPTLP HRFSKSECLS RRRYRVSFPR SSAASSDQLS VSTQAKNPGI HGNKKELTGL QPIVEKMTPP VRLATSAVVL
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF
Arabidopsis Description
TIC110Protein TIC110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LPR9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.