Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 10
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0041g01360.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G06950.1 | VIT_18s0041g01360.t01 | AT5G16620.1 | 15829604 |
| AT1G06950.1 | VIT_18s0041g01360.t01 | AT5G16620.1 | 17535810 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH17141 | Soybean | endoplasmic reticulum | 75.37 | 76.2 |
| KRH72787 | Soybean | endoplasmic reticulum | 75.27 | 76.18 |
| Solyc09g031780.2.1 | Tomato | plastid | 71.8 | 71.94 |
| KRH30145 | Soybean | cytosol | 8.94 | 70.87 |
| KRG98182 | Soybean | plastid | 69.22 | 70.4 |
| CDX86508 | Canola | plastid | 69.31 | 68.9 |
| CDY15593 | Canola | plastid | 69.22 | 68.81 |
| Bra030666.1-P | Field mustard | plastid | 69.02 | 68.61 |
| Bra015538.1-P | Field mustard | plastid | 68.12 | 68.39 |
| CDY54889 | Canola | plastid | 68.12 | 68.39 |
| CDY10236 | Canola | plastid | 68.12 | 68.26 |
| AT1G06950.1 | Thale cress | plastid | 68.62 | 68.01 |
| GSMUA_Achr11P... | Banana | plastid | 67.53 | 66.8 |
| HORVU5Hr1G048520.1 | Barley | cytosol | 2.88 | 60.42 |
| Os10t0492000-01 | Rice | plastid | 34.96 | 59.36 |
| CDY06840 | Canola | cytosol, mitochondrion | 5.56 | 58.95 |
| TraesCS1D01G174900.1 | Wheat | plastid | 57.3 | 56.18 |
| TraesCS1A01G165800.1 | Wheat | golgi | 57.1 | 55.99 |
| TraesCS1B01G182500.1 | Wheat | plastid | 57.1 | 55.93 |
| OQU91582 | Sorghum | plastid | 55.41 | 54.81 |
| Zm00001d032615_P002 | Maize | mitochondrion | 54.52 | 54.2 |
| HORVU1Hr1G043940.3 | Barley | plastid | 57.2 | 53.53 |
| HORVU1Hr1G043900.4 | Barley | plastid | 23.24 | 52.35 |
| TraesCS1D01G175000.1 | Wheat | plastid | 23.14 | 52.24 |
| TraesCS1B01G182400.1 | Wheat | plastid | 23.04 | 52.02 |
| TraesCS1A01G165700.1 | Wheat | plastid | 22.94 | 51.79 |
| Os10t0492300-01 | Rice | plastid | 20.95 | 49.41 |
| CDX94311 | Canola | cytosol | 19.07 | 46.83 |
| Zm00001d004430_P001 | Maize | cytosol | 4.17 | 43.75 |
| Os10t0492101-00 | Rice | plastid | 6.26 | 36.0 |
Protein Annotations
| EntrezGene:100257043 | wikigene:100257043 | MapMan:23.1.3.2 | ProteinID:CBI15848 | ProteinID:CBI15848.3 | UniProt:D7SJM2 |
| EMBL:FN594951 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009658 | GO:GO:0009941 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0045037 | GO:GO:0061927 | EntrezGene:LOC100257043 |
| wikigene:LOC100257043 | PFAM:PF16940 | PANTHER:PTHR34935 | TIGR:TC53380 | InterPro:TIC110 | TMHMM:TMhelix |
| UniParc:UPI00015C81B4 | ArrayExpress:VIT_06s0004g07730 | EnsemblPlantsGene:VIT_06s0004g07730 | EnsemblPlants:VIT_06s0004g07730.t01 | unigene:Vvi.6235 | RefSeq:XP_002276796 |
| RefSeq:XP_002276796.2 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:8529593..8538801
Molecular Weight (calculated)
110902.0 Da
IEP (calculated)
5.408
GRAVY (calculated)
-0.270
Length
1007 amino acids
Sequence
(BLAST)
(BLAST)
0001: MNPSLLTAPP PSQHSSPFLN PTPFRFSTTS LTRRRRYRIS LIRSSSTPPD PLTSSPPSVT SDVFGGRREL SGIQPLVDSL SPPLRLVSSA LIVAGAIAAG
0101: YGLGFRFGKS RNTALGGAVA IGAAGGAAAY ALNACVPEVA AANLHNYVAG CDDPGAVKKE DIEEIANKYG VSKQDEAFNA ELCDLYCRFV TSVVPPGSED
0201: LKGDEVDTII KFKSSLGIDD PDAAAMHMEI GRRIFRQRLE TGDRDGDIEQ RRAFQKLVYV STLVFGEASK FLLPWKRVFR VTDSQVEVAV RDNAQRLYAF
0301: KLKSVGRDVD VNQLVSLREA QLSCLLSDEL AEDMFKEHTR KLVEENISTA LSILKSRTRA VRGATQVVEE LNKALAFNNL LISLKNHPDA GRFACGVGPI
0401: SLMGGEYDGD RKMDDLKLLY RAYVADSLSS GRMVENKLAA LNQLKNIFGL GKRETEGIML DVTSKAYRKR LAQSVSGGDL EAADSKAAFL QNICDELHFD
0501: PKKASEIHEE IYRQKLQQCV ADGELNEEDV AILLRLRVML CVPQQTVEAA HADICGSLFE KVVKDAIASG IDGYDDDVKK SVRKAAHGLR LTREAAMSIA
0601: STAVRKIFMN YVKRSRAAGN RIEAAKELKK MIAFNSLVVT ELVADIKGES SDAASEEPIK EEEVQIEEDD DWDSLETLRK IKPREKLTAK LGRRGGQTEI
0701: TLKDDLPERD RTDLYKTYLL FCLTGEVTKI PFGAQITTKK DDSEYLLLNQ LGGILGLTDK EIVEVHRSLA EQAFRQQAEV ILADGQLTKA RIEQLNEVQK
0801: QVGLPPQYAQ KVIKNITTTK MGAAIETAVS QGRLNIKQIR ELKEASVDLD SMLSESLREN VFKKTVDEMF SSGTGEFDGE EVYEKIPLDL NINAEKAKGV
0901: VHELARTRLS NSLIQAVSLL RQRNSSGVVS SLNDLLACDK AVPSEPLSWE VTEELADLFA IYMKSDPAPE KLSRLQYLLG ISDSTAATLR EMGDRVLQIG
1001: TEEEFVF
0101: YGLGFRFGKS RNTALGGAVA IGAAGGAAAY ALNACVPEVA AANLHNYVAG CDDPGAVKKE DIEEIANKYG VSKQDEAFNA ELCDLYCRFV TSVVPPGSED
0201: LKGDEVDTII KFKSSLGIDD PDAAAMHMEI GRRIFRQRLE TGDRDGDIEQ RRAFQKLVYV STLVFGEASK FLLPWKRVFR VTDSQVEVAV RDNAQRLYAF
0301: KLKSVGRDVD VNQLVSLREA QLSCLLSDEL AEDMFKEHTR KLVEENISTA LSILKSRTRA VRGATQVVEE LNKALAFNNL LISLKNHPDA GRFACGVGPI
0401: SLMGGEYDGD RKMDDLKLLY RAYVADSLSS GRMVENKLAA LNQLKNIFGL GKRETEGIML DVTSKAYRKR LAQSVSGGDL EAADSKAAFL QNICDELHFD
0501: PKKASEIHEE IYRQKLQQCV ADGELNEEDV AILLRLRVML CVPQQTVEAA HADICGSLFE KVVKDAIASG IDGYDDDVKK SVRKAAHGLR LTREAAMSIA
0601: STAVRKIFMN YVKRSRAAGN RIEAAKELKK MIAFNSLVVT ELVADIKGES SDAASEEPIK EEEVQIEEDD DWDSLETLRK IKPREKLTAK LGRRGGQTEI
0701: TLKDDLPERD RTDLYKTYLL FCLTGEVTKI PFGAQITTKK DDSEYLLLNQ LGGILGLTDK EIVEVHRSLA EQAFRQQAEV ILADGQLTKA RIEQLNEVQK
0801: QVGLPPQYAQ KVIKNITTTK MGAAIETAVS QGRLNIKQIR ELKEASVDLD SMLSESLREN VFKKTVDEMF SSGTGEFDGE EVYEKIPLDL NINAEKAKGV
0901: VHELARTRLS NSLIQAVSLL RQRNSSGVVS SLNDLLACDK AVPSEPLSWE VTEELADLFA IYMKSDPAPE KLSRLQYLLG ISDSTAATLR EMGDRVLQIG
1001: TEEEFVF
0001: MNPSLVTAIN APISPSPRSP LLSHFLPTLP HRFSKSECLS RRRYRVSFPR SSAASSDQLS VSTQAKNPGI HGNKKELTGL QPIVEKMTPP VRLATSAVVL
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF
Arabidopsis Description
TIC110Protein TIC110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LPR9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.