CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69438
CDX85495
CDY38098
CDY49648

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06950.1	CDX69438	AT5G16620.1	15829604
AT1G06950.1	CDX85495	AT5G16620.1	15829604
AT1G06950.1	CDY38098	AT5G16620.1	15829604
AT1G06950.1	CDY49648	AT5G16620.1	15829604
AT1G06950.1	CDX69438	AT5G16620.1	17535810
AT1G06950.1	CDX85495	AT5G16620.1	17535810
AT1G06950.1	CDY38098	AT5G16620.1	17535810
AT1G06950.1	CDY49648	AT5G16620.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94311	Canola	cytosol	46.32	10.73
Os10t0492000-01	Rice	plastid	46.32	7.42
Bra015538.1-P	Field mustard	plastid	73.68	6.98
CDY54889	Canola	plastid	73.68	6.98
CDY10236	Canola	plastid	73.68	6.97
CDX86508	Canola	plastid	73.68	6.91
CDY15593	Canola	plastid	73.68	6.91
AT1G06950.1	Thale cress	plastid	71.58	6.69
KRH72787	Soybean	endoplasmic reticulum	63.16	6.03
KRH17141	Soybean	endoplasmic reticulum	63.16	6.02
VIT_06s0004g07730.t01	Wine grape	plastid	58.95	5.56
Solyc09g031780.2.1	Tomato	plastid	54.74	5.17
KRG98182	Soybean	plastid	52.63	5.05
GSMUA_Achr11P...	Banana	plastid	52.63	4.91
TraesCS1D01G174900.1	Wheat	plastid	49.47	4.58
TraesCS1A01G165800.1	Wheat	golgi	49.47	4.58
TraesCS1B01G182500.1	Wheat	plastid	49.47	4.57
HORVU1Hr1G043940.3	Barley	plastid	50.53	4.46
Os10t0492300-01	Rice	plastid	17.89	3.98
OQU91582	Sorghum	plastid	42.11	3.93
Zm00001d032615_P002	Maize	mitochondrion	41.05	3.85
TraesCS1A01G165700.1	Wheat	plastid	13.68	2.91
TraesCS1B01G182400.1	Wheat	plastid	13.68	2.91
TraesCS1D01G175000.1	Wheat	plastid	13.68	2.91
HORVU1Hr1G043900.4	Barley	plastid	13.68	2.91
KRH30145	Soybean	cytosol	1.05	0.79
Os10t0492101-00	Rice	plastid	0.0	0.0
Zm00001d004430_P001	Maize	cytosol	0.0	0.0
HORVU5Hr1G048520.1	Barley	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY06840	EnsemblPlantsGene:GSBRNA2T00123107001	GO:A0A078EXM3	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:TIC110	PANTHER:PTHR34935	PFAM:PF16940
ProteinID:CDY06840	ProteinID:CDY06840.1	SEG:seg	UniParc:UPI0004EEDECD	MapMan:35.2	:

Description

BnaC01g09390D

Coordinates

chrLK031973:+:736296..737997

Molecular Weight (calculated)

10376.8 Da

IEP (calculated)

7.696

GRAVY (calculated)

0.149

Length

95 amino acids

Sequence
(BLAST)

1: MSELQQRQLV AVSQVRNILG LGTREAEAIT VDVTSKAYRK RLAIHEGILG PPDLMLLQVT TKRDDSEYLL LNQLGGILGL ISKEIVNIHV GLGVS

Best Arabidopsis Sequence Match ( AT1G06950.1 )
(BLAST)

0001: MNPSLVTAIN APISPSPRSP LLSHFLPTLP HRFSKSECLS RRRYRVSFPR SSAASSDQLS VSTQAKNPGI HGNKKELTGL QPIVEKMTPP VRLATSAVVL
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF

Arabidopsis Description

TIC110Protein TIC110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LPR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.