Factsheet for Os10t0492300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

vacuole: 18557835
nucleus: 19621931
plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0439900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06950.1	Os04t0439900-01	AT5G16620.1	15829604
AT1G06950.1	Os04t0439900-01	AT5G16620.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0492101-00	Rice	plastid	18.97	46.29
Os10t0492000-01	Rice	plastid	38.88	27.99
GSMUA_Achr11P...	Banana	plastid	51.05	21.41
VIT_06s0004g07730.t01	Wine grape	plastid	49.41	20.95
KRH72787	Soybean	endoplasmic reticulum	47.54	20.4
KRH17141	Soybean	endoplasmic reticulum	47.54	20.38
Solyc09g031780.2.1	Tomato	plastid	45.67	19.4
CDY15593	Canola	plastid	45.2	19.05
CDX86508	Canola	plastid	45.2	19.05
Bra030666.1-P	Field mustard	plastid	44.96	18.95
CDY10236	Canola	plastid	44.26	18.81
AT1G06950.1	Thale cress	plastid	44.26	18.6
CDY54889	Canola	plastid	43.56	18.54
Bra015538.1-P	Field mustard	plastid	43.56	18.54
CDY06840	Canola	cytosol, mitochondrion	3.98	17.89
KRG98182	Soybean	plastid	41.45	17.88
CDX94311	Canola	cytosol	9.13	9.51
KRH30145	Soybean	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Os10t0492300-01	EnsemblPlantsGene:Os10g0492300	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	InterPro:TIC110	PANTHER:PTHR34935	PFAM:PF16940	ProteinID:BAF26845.1
ProteinID:BAT11439.1	SEG:seg	UniParc:UPI0000DD9A11	UniProt:Q0IWS0	MapMan:23.1.3.2	:

Description

Similar to IAP100. (Os10t0492300-01)

Coordinates

chr10:-:18687994..18693376

Molecular Weight (calculated)

46056.1 Da

IEP (calculated)

5.748

GRAVY (calculated)

-0.000

Length

427 amino acids

Sequence
(BLAST)

001: MELSLASAKP SPRAAAAAAA AAAASSSLLS LRGRRRRVGV VCAAVSSGEE VFGGRRELAG VQPLVEALPP VARAVVELAV VAAAAAAGYV VGLRAGGTRT
101: TTAAVNSAVP GVAAAGLHNY VAGSDDPTKL ESSEVEAIAS KYGVSTEDAT FKAELCDLYG RFVFSLIHPG YEDLEGTEVE TIIKFKKALG LNDIDAANVH
201: MEIAKRIDRN AGVGQQQAFE KLIFVTNLVF RDAYEYLLPW KRLFGVHESQ IDDVMRESAK SLYASLLKSI GRGLDIGTLI EVRRSQLAYK LSDEIASEMF
301: REHAKKLVEE NISTALNNLN NRTQVVEEVK SILSFNGMLT VLSNFPGEER FVRGLGPITL GGDSDHEKRV EDLKMLYSAY AMEVLSDGHL NDDKLAALNQ
401: LRNIFGLAKY EAEAIITDVK ARVFQTY

Best Arabidopsis Sequence Match ( AT1G06950.1 )
(BLAST)

0001: MNPSLVTAIN APISPSPRSP LLSHFLPTLP HRFSKSECLS RRRYRVSFPR SSAASSDQLS VSTQAKNPGI HGNKKELTGL QPIVEKMTPP VRLATSAVVL
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF

Arabidopsis Description

TIC110Protein TIC110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LPR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.