Factsheet for Solyc09g031780.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc11g020300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06950.1	Solyc11g020300.1.1	AT5G16620.1	15829604
AT1G06950.1	Solyc11g020300.1.1	AT5G16620.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g07730.t01	Wine grape	plastid	71.94	71.8
KRH17141	Soybean	endoplasmic reticulum	69.05	69.68
KRH72787	Soybean	endoplasmic reticulum	68.66	69.35
KRG98182	Soybean	plastid	63.98	64.95
CDY54889	Canola	plastid	64.58	64.71
CDY10236	Canola	plastid	64.68	64.68
Bra015538.1-P	Field mustard	plastid	64.48	64.61
CDX86508	Canola	plastid	64.38	63.87
Bra030666.1-P	Field mustard	plastid	64.18	63.67
CDY15593	Canola	plastid	64.18	63.67
AT1G06950.1	Thale cress	plastid	64.18	63.48
KRH30145	Soybean	cytosol	7.86	62.2
GSMUA_Achr11P...	Banana	plastid	61.29	60.51
Os10t0492000-01	Rice	plastid	34.23	58.01
HORVU5Hr1G048520.1	Barley	cytosol	2.69	56.25
CDY06840	Canola	cytosol, mitochondrion	5.17	54.74
TraesCS1D01G174900.1	Wheat	plastid	53.83	52.68
TraesCS1B01G182500.1	Wheat	plastid	53.73	52.53
TraesCS1A01G165800.1	Wheat	golgi	53.63	52.48
OQU91582	Sorghum	plastid	52.74	52.06
Zm00001d032615_P002	Maize	mitochondrion	52.24	51.83
HORVU1Hr1G043940.3	Barley	plastid	53.53	50.0
TraesCS1D01G175000.1	Wheat	plastid	21.39	48.21
HORVU1Hr1G043900.4	Barley	plastid	21.39	48.1
TraesCS1A01G165700.1	Wheat	plastid	21.19	47.76
TraesCS1B01G182400.1	Wheat	plastid	21.19	47.76
Os10t0492300-01	Rice	plastid	19.4	45.67
CDX94311	Canola	cytosol	17.61	43.17
Zm00001d004430_P001	Maize	cytosol	3.88	40.62
Os10t0492101-00	Rice	plastid	5.67	32.57

Protein Annotations

MapMan:23.1.3.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009941	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0045037	GO:GO:0061927	UniProt:K4CSN4
PFAM:PF16940	PANTHER:PTHR34935	EnsemblPlantsGene:Solyc09g031780.2	EnsemblPlants:Solyc09g031780.2.1	InterPro:TIC110	TMHMM:TMhelix
UniParc:UPI000276C8F7	SEG:seg	:	:	:	:

Description

Protein TIC110, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G06950) UniProtKB/Swiss-Prot;Acc:Q8LPR9]

Coordinates

chr9:+:27851899..27869020

Molecular Weight (calculated)

111624.0 Da

IEP (calculated)

5.729

GRAVY (calculated)

-0.280

Length

1005 amino acids

Sequence
(BLAST)

0001: MNPSSLLLPI NQPPPVNTFR SQFLNPTPLR LTPKFYLKRR IQSTVISSSS ASLQHKPTSV NPDVFGGKKE LSPIQSLVDA MSPPIRIASS ALIFAAAIAA
0101: GYGLGLRFGG SRNAGLGGAI AFGAAGAGAA YALNSCAPQV AAINLHNYVA DFDNPAALNK EDIESIANKY GVSKQNEAFN AELRDIYCRY ISAVLPASTE
0201: ELRGDEVDTI IKFKNALGID DPDAADMHME IGRRIFRQRL ETGDRDGDME QRRAFQKLIY VSTLVFGESS AFLLPWKRVF KVTDAQVDVA VRDNAQRLYA
0301: SKLKSVGRDI DVNQLISLRE AQLAYRLSDE LAHEMLKEHA RKLVEEIIST AVGILKSRTR ATEPTRVIEE LDKVLSYNNL LISLKNHADA SRFAPGIGPV
0401: SLVGGEYDGD RKMDDLKLLY RAYVTDSLSS GRMEEDKLAA LNQLRNIFGL GKREADTITL DVTSKVYRKR LAQAVTSGEL EAFESKAAYL QNLCEELIFD
0501: PQKALEIHQE IYRQKLQLLV TDGELSDEDM KALERLQVML CVPKQTVEAA HADICGSLFE KVVKEAIACG IDGYDTETKN AVRKAAYGLR LTRDVAMTIA
0601: SKAVRKIFIT YIQRVRGAGS RTESAKELKK MIAFNSFVAS QLVADIKGES SDTPAEETQQ EQIQQNEEED EEWESLQSLR KVKPSKKNLR KDIQTEITLK
0701: DDLPERERTE LYKTYLLFCL TGQVTKIPFG VQITTKKDDS EYVFLSQLGS ILGLTDSEIV GVHQGLAEQA FRQQAEVILA DGQITKAKMV QLNELQKNVG
0801: LPPHYAQNII KSITTTKLAA ALETAVGQGR LSIKEIRELK ESSVDINTMI SESLRENLFK KTLADIFSSG TGEFDEEEVY ENVPKDLNIN VEKAKKVVHE
0901: LARSRLSNSL IQAVSLLRQR NHKALVYSLN DLLACDKAVP AIPLSWEVPE ELSDLFIVYL KSDPPPEKLS RLQYLLGISD STAETLRTVK DRELPNGAGE
1001: EEFVF

Best Arabidopsis Sequence Match ( AT1G06950.1 )
(BLAST)

0001: MNPSLVTAIN APISPSPRSP LLSHFLPTLP HRFSKSECLS RRRYRVSFPR SSAASSDQLS VSTQAKNPGI HGNKKELTGL QPIVEKMTPP VRLATSAVVL
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF

Arabidopsis Description

TIC110Protein TIC110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LPR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.