Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06840 | Canola | cytosol, mitochondrion | 10.73 | 46.32 |
| KRH30145 | Soybean | cytosol | 9.27 | 29.92 |
| Bra015538.1-P | Field mustard | plastid | 57.8 | 23.63 |
| CDY54889 | Canola | plastid | 57.8 | 23.63 |
| CDY10236 | Canola | plastid | 57.32 | 23.38 |
| CDX86508 | Canola | plastid | 57.07 | 23.1 |
| CDY15593 | Canola | plastid | 57.07 | 23.1 |
| Os10t0492000-01 | Rice | plastid | 32.93 | 22.77 |
| AT1G06950.1 | Thale cress | plastid | 56.34 | 22.74 |
| KRH72787 | Soybean | endoplasmic reticulum | 49.51 | 20.4 |
| KRH17141 | Soybean | endoplasmic reticulum | 49.27 | 20.28 |
| VIT_06s0004g07730.t01 | Wine grape | plastid | 46.83 | 19.07 |
| KRG98182 | Soybean | plastid | 44.39 | 18.38 |
| GSMUA_Achr11P... | Banana | plastid | 44.39 | 17.88 |
| Solyc09g031780.2.1 | Tomato | plastid | 43.17 | 17.61 |
| TraesCS1B01G182500.1 | Wheat | plastid | 38.78 | 15.47 |
| TraesCS1A01G165800.1 | Wheat | golgi | 38.54 | 15.38 |
| TraesCS1D01G174900.1 | Wheat | plastid | 38.54 | 15.38 |
| OQU91582 | Sorghum | plastid | 36.83 | 14.83 |
| Zm00001d032615_P002 | Maize | mitochondrion | 36.59 | 14.81 |
| HORVU1Hr1G043940.3 | Barley | plastid | 38.78 | 14.78 |
| Zm00001d004430_P001 | Maize | cytosol | 2.93 | 12.5 |
| TraesCS1B01G182400.1 | Wheat | plastid | 10.24 | 9.42 |
| TraesCS1D01G175000.1 | Wheat | plastid | 10.24 | 9.42 |
| Os10t0492300-01 | Rice | plastid | 9.51 | 9.13 |
| TraesCS1A01G165700.1 | Wheat | plastid | 9.76 | 8.97 |
| HORVU1Hr1G043900.4 | Barley | plastid | 9.51 | 8.72 |
| HORVU5Hr1G048520.1 | Barley | cytosol | 0.98 | 8.33 |
| Os10t0492101-00 | Rice | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX94311 | EnsemblPlantsGene:GSBRNA2T00157412001 | GO:A0A078DYM7 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | InterPro:TIC110 | PANTHER:PTHR34935 | PFAM:PF16940 |
| ProteinID:CDX94311 | ProteinID:CDX94311.1 | SEG:seg | UniParc:UPI0004EECD58 | MapMan:35.1 | : |
Description
BnaC01g18730D
Coordinates
chrLK031881:-:162529..165550
Molecular Weight (calculated)
46013.4 Da
IEP (calculated)
9.752
GRAVY (calculated)
-0.419
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MIVRHAPHHK QREPKPDNYT VALRKALMFF NAQKSTKWLG KLVPSGIAHT VAYLAGITSF PELRPLTLDL YGIGDAISSG RVEENKLVAV SQLRNILGLG
101: TREAEAISVD FTSKAYRKRL AIHEVFPSQS SDNNLLFFRN LQAEASTICS DGEPSDDNVA ALLRVRVMLC IPQQTIEAAN AEICGSIFEK CCSFNARSNF
201: FWSEMVTNAE TRKSVRKAAH GLLRLSERLP CLLLARLSVG FSQTIYQTSK SGREPQRVSK GAQEDDCLES LRKTRPDKEL AEKMGKPGQT EITLKNDLPE
301: RDRIDLYKTI LALLSNRREI VNIHVGLAEQ EFRQQAAVIL ADGQLTKARV EQLDELQKQE QVGLPQPLTE KVIKNITTTK MANAKETAVN QGRQNIKQIR
401: ESSRRQTIQY
101: TREAEAISVD FTSKAYRKRL AIHEVFPSQS SDNNLLFFRN LQAEASTICS DGEPSDDNVA ALLRVRVMLC IPQQTIEAAN AEICGSIFEK CCSFNARSNF
201: FWSEMVTNAE TRKSVRKAAH GLLRLSERLP CLLLARLSVG FSQTIYQTSK SGREPQRVSK GAQEDDCLES LRKTRPDKEL AEKMGKPGQT EITLKNDLPE
301: RDRIDLYKTI LALLSNRREI VNIHVGLAEQ EFRQQAAVIL ADGQLTKARV EQLDELQKQE QVGLPQPLTE KVIKNITTTK MANAKETAVN QGRQNIKQIR
401: ESSRRQTIQY
0001: MNPSLVTAIN APISPSPRSP LLSHFLPTLP HRFSKSECLS RRRYRVSFPR SSAASSDQLS VSTQAKNPGI HGNKKELTGL QPIVEKMTPP VRLATSAVVL
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF
0101: AASLATGYGL GLRLAGSRNI AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK GDEAFQAEIC DIYCRYVTSV
0201: LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN
0301: AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF
0401: ARGVGPISLI GDESDFERRM DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN AVSSGDLEAQ DSKAKYLQKL
0501: CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR
0601: ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK
0701: PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ
0801: LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV
0901: EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM
1001: EDGALSSAAE EGNFVF
Arabidopsis Description
TIC110Protein TIC110, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LPR9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.