CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86508
CDX94311
CDY06840
CDY10236
CDY15593
CDY54889

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16620.1	CDX86508	AT1G06950.1	17535810
AT5G16620.1	CDX94311	AT1G06950.1	17535810
AT5G16620.1	CDY06840	AT1G06950.1	17535810
AT5G16620.1	CDY10236	AT1G06950.1	17535810
AT5G16620.1	CDY15593	AT1G06950.1	17535810
AT5G16620.1	CDY54889	AT1G06950.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008608.1-P	Field mustard	plastid	98.69	98.69
CDY49648	Canola	plastid	91.68	92.09
CDX85495	Canola	plastid	86.0	87.33
CDY38098	Canola	plastid	85.56	86.89
AT5G16620.1	Thale cress	plastid	82.93	84.79
PGSC0003DMT400059853	Potato	nucleus, plastid	40.04	60.4
GSMUA_Achr8P16240_001	Banana	nucleus	36.54	57.59
GSMUA_Achr11P...	Banana	plastid	36.32	57.24
KRG98060	Soybean	endoplasmic reticulum	53.17	56.25
KRH30716	Soybean	endoplasmic reticulum	52.74	56.18
VIT_18s0041g01360.t01	Wine grape	plastid	53.39	55.96
Solyc11g020300.1.1	Tomato	plastid	50.55	52.14
TraesCS2B01G325100.2	Wheat	plastid	43.98	47.29
HORVU2Hr1G076790.7	Barley	plastid	43.76	46.95
TraesCS2A01G308600.4	Wheat	plastid	43.54	46.82
TraesCS2D01G306800.1	Wheat	plastid	43.33	46.81
Os04t0439900-01	Rice	plastid	43.11	45.92
EES12206	Sorghum	plastid	42.67	44.72
Zm00001d025453_P006	Maize	plastid	42.45	43.11
Zm00001d003612_P001	Maize	plastid	23.41	35.2
Zm00001d023857_P001	Maize	plastid	13.13	35.09

Protein Annotations

EnsemblPlants:CDX69438	EnsemblPlantsGene:GSBRNA2T00135408001	Gene3D:1.10.260.100	Gene3D:3.40.190.140	InterPro:IPR038108	InterPro:RPN13_C_sf
InterPro:STI1_HS-bd	ProteinID:CDX69438	ProteinID:CDX69438.1	SEG:seg	SMART:SM00727	UniParc:UPI0004EECC11
MapMan:23.1.3.3	:	:	:	:	:

Description

BnaA10g17870D

Coordinates

chrLK031790:-:214880..218281

Molecular Weight (calculated)

49586.6 Da

IEP (calculated)

6.800

GRAVY (calculated)

-0.515

Length

457 amino acids

Sequence
(BLAST)

001: MENLTLVSCS ASSSSPKLLI GCNFTSSLKP PVGFSRRTPK ILLRRSKISA SSAQSHSPSD NAGEIVVVKH KTKAFASIFS SRSDKQTASV ASPSAAVPPP
101: SSSSTIGSPL FWIGVGVGLS ALFSWVTSNA KKYAMQTAMK TMMNQMNTQN SQFNNPGFPT GAGSGSGSPF PFPFPPQTSP TSSPFQSQSQ SSGATVDVTA
201: TKVDRPPVSK PQTTPTPPTK NIQVDKPSVV LEENKAKKEE KNYAFEDVSP EETTKESPFS NYAEVSEASA PKETRLFDDV LQNGAAPANG ATASEVFQSL
301: GAGKGGAGLS VEALEKMMED PTVQKMVYPH LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTETLKNFDL NSPEVKQQFD QIGLTPEEVI
401: SKIMENPDVA MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Best Arabidopsis Sequence Match ( AT5G16620.1 )
(BLAST)

001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Arabidopsis Description

TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.