CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU91582

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16620.1	OQU91582	AT1G06950.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023857_P001	Maize	plastid	34.63	88.3
Zm00001d003612_P001	Maize	plastid	56.88	81.58
Os04t0439900-01	Rice	plastid	78.21	79.49
TraesCS2A01G308600.4	Wheat	plastid	76.61	78.59
TraesCS2B01G325100.2	Wheat	plastid	76.38	78.35
HORVU2Hr1G076790.7	Barley	plastid	76.38	78.17
TraesCS2D01G306800.1	Wheat	plastid	74.08	76.36
GSMUA_Achr11P...	Banana	plastid	36.24	54.48
GSMUA_Achr8P16240_001	Banana	nucleus	36.01	54.14
PGSC0003DMT400059853	Potato	nucleus, plastid	36.24	52.15
VIT_18s0041g01360.t01	Wine grape	plastid	49.08	49.08
KRH30716	Soybean	endoplasmic reticulum	47.48	48.25
KRG98060	Soybean	endoplasmic reticulum	47.71	48.15
Solyc11g020300.1.1	Tomato	plastid	45.18	44.47
AT5G16620.1	Thale cress	plastid	45.18	44.07
CDX85495	Canola	plastid	45.41	44.0
CDY38098	Canola	plastid	44.95	43.56
CDX69438	Canola	plastid	44.72	42.67
Bra008608.1-P	Field mustard	plastid	44.5	42.45
CDY49648	Canola	plastid	43.35	41.54
Bra023577.1-P	Field mustard	plastid	32.11	36.27

Protein Annotations

Gene3D:1.10.260.100	MapMan:23.1.3.3	EntrezGene:8080326	UniProt:C5Y8T1	EnsemblPlants:EES12206	ProteinID:EES12206
ProteinID:EES12206.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009658
GO:GO:0009706	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0045037
PANTHER:PTHR22904	PANTHER:PTHR22904:SF490	SMART:SM00727	EnsemblPlantsGene:SORBI_3006G088000	InterPro:STI1_HS-bd	unigene:Sbi.12751
UniParc:UPI0001A871A5	RefSeq:XP_002447878.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:45714422..45721212

Molecular Weight (calculated)

47321.1 Da

IEP (calculated)

4.794

GRAVY (calculated)

-0.405

Length

436 amino acids

Sequence
(BLAST)

001: MESLVLASSC SASPRLPLIS SAARFRRLPG SVPPPTVAAA STGGAARKGP RRPRLFVVAA AAPRGSGNVF EGLRAKGFAS VSSSTGNENM STGTGTLPPV
101: PPPSSYFGSP VFWIGVGVAL SVAFTTVSSM VKRYAMEQAF KSMMTQAPPN SFGSNSPFPF GMPPQASPTA PSSFPYLEPK KDTSPQVSTV DVSATEVEAA
201: GTSKEVDVTE TPEPSKKFAF VDVSPEELQQ KNLQSSLETV DVKHDSTDSE SKEDIEEKVL PTNGATFKPN EDAARGPTEP SNSGPMLSVE TIEKMMEDPT
301: VQKMVYPYLP EEMRNPDSFK WMLQNPMYRQ QLQDMLNNMG ASPDQWDNRM VDHLKNFDLS SPEVRQQFAQ VGMTPEEVVS KIMANPDVAV AFQNPKIQTA
401: IMDCSQNPLN IVKYQNDKEV MDVFMKISQI FPQING

Best Arabidopsis Sequence Match ( AT5G16620.1 )
(BLAST)

001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Arabidopsis Description

TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.