Factsheet for AT5G16620.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85495	Canola	plastid	86.58	86.0
CDY38098	Canola	plastid	85.91	85.33
CDX69438	Canola	plastid	84.79	82.93
Bra008608.1-P	Field mustard	plastid	84.56	82.71
Bra023577.1-P	Field mustard	plastid	71.14	82.38
CDY49648	Canola	plastid	80.54	79.12
PGSC0003DMT400059853	Potato	nucleus, plastid	41.61	61.39
VIT_18s0041g01360.t01	Wine grape	plastid	55.93	57.34
GSMUA_Achr8P16240_001	Banana	nucleus	36.91	56.9
GSMUA_Achr11P...	Banana	plastid	36.69	56.55
KRG98060	Soybean	endoplasmic reticulum	53.91	55.79
KRH30716	Soybean	endoplasmic reticulum	53.47	55.71
Solyc11g020300.1.1	Tomato	plastid	52.57	53.05
TraesCS2B01G325100.2	Wheat	plastid	43.85	46.12
TraesCS2D01G306800.1	Wheat	plastid	43.4	45.86
Os04t0439900-01	Rice	plastid	43.85	45.69
TraesCS2A01G308600.4	Wheat	plastid	43.4	45.65
HORVU2Hr1G076790.7	Barley	plastid	43.4	45.54
EES12206	Sorghum	plastid	44.07	45.18
Zm00001d025453_P006	Maize	plastid	44.07	43.78
Zm00001d003612_P001	Maize	plastid	23.94	35.2
Zm00001d023857_P001	Maize	plastid	13.2	34.5

Protein Annotations

Gene3D:1.10.260.100	MapMan:23.1.3.3	PDB:2LNM	EntrezGene:831524	UniProt:A0A178UEV6	ProteinID:AED92318.1
EMBL:AF428299	ArrayExpress:AT5G16620	EnsemblPlantsGene:AT5G16620	RefSeq:AT5G16620	TAIR:AT5G16620	RefSeq:AT5G16620-TAIR-G
EnsemblPlants:AT5G16620.1	TAIR:AT5G16620.1	EMBL:AY093010	Unigene:At.25049	ProteinID:BAB10189.1	EMBL:BT006595
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009528	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009658	GO:GO:0009706	GO:GO:0009941	GO:GO:0009987
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0031897	GO:GO:0045037
RefSeq:NP_197165.1	ProteinID:OAO91697.1	Symbol:PDE120	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	UniProt:Q9FMD5	SMART:SM00727	InterPro:STI1_HS-bd
UniParc:UPI00000A40D7	SEG:seg	:	:	:	:

Description

TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]

Coordinates

chr5:+:5450620..5454577

Molecular Weight (calculated)

48905.8 Da

IEP (calculated)

5.072

GRAVY (calculated)

-0.550

Length

447 amino acids

Sequence
(BLAST)

001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.