Factsheet for Zm00001d025453_P006

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, vacuole
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	vacuole

plastid: 20089766
plastid: 22065420
plastid: 23198870
plasma membrane: 27341663

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004430_P001
Zm00001d032615_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16620.1	Zm00001d004430_P001	AT1G06950.1	17535810
AT5G16620.1	Zm00001d032615_P002	AT1G06950.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023857_P001	Maize	plastid	30.89	81.29
Os04t0439900-01	Rice	plastid	75.78	79.49
Zm00001d003612_P001	Maize	plastid	52.89	78.29
HORVU2Hr1G076790.7	Barley	plastid	72.22	76.29
TraesCS2A01G308600.4	Wheat	plastid	72.0	76.24
TraesCS2B01G325100.2	Wheat	plastid	71.78	76.0
TraesCS2D01G306800.1	Wheat	plastid	70.22	74.7
GSMUA_Achr11P...	Banana	plastid	34.22	53.1
GSMUA_Achr8P16240_001	Banana	nucleus	34.22	53.1
PGSC0003DMT400059853	Potato	nucleus, plastid	34.67	51.49
KRH30716	Soybean	endoplasmic reticulum	47.78	50.12
KRG98060	Soybean	endoplasmic reticulum	47.78	49.77
VIT_18s0041g01360.t01	Wine grape	plastid	47.33	48.85
Solyc11g020300.1.1	Tomato	plastid	43.56	44.24
AT5G16620.1	Thale cress	plastid	43.78	44.07
CDX85495	Canola	plastid	43.78	43.78
CDY38098	Canola	plastid	43.11	43.11
Bra008608.1-P	Field mustard	plastid	43.33	42.67
CDX69438	Canola	plastid	43.11	42.45
CDY49648	Canola	plastid	42.0	41.54
Bra023577.1-P	Field mustard	plastid	31.56	36.79

Protein Annotations

EMBL:BT055518	EnsemblPlants:Zm00001d025453_P006	EnsemblPlants:Zm00001d025453_T006	EnsemblPlantsGene:Zm00001d025453	EntrezGene:100285102	Gene3D:1.10.260.100
InterPro:STI1_HS-bd	PANTHER:PTHR22904	PANTHER:PTHR22904:SF490	ProteinID:AQK43766.1	SEG:seg	SMART:SM00727
UniParc:UPI000191775D	UniProt:B8A1S6	MapMan:23.1.3.3	:	:	:

Description

Protein TIC 40 chloroplastic

Coordinates

chr10:-:119060830..119068182

Molecular Weight (calculated)

48986.9 Da

IEP (calculated)

4.874

GRAVY (calculated)

-0.454

Length

450 amino acids

Sequence
(BLAST)

001: MESLILASSC SASPRLPLLS SAARFRGLPV SVPPPSSASI SGAARKGPMR PRLFVAAAAA PRGSGNVFEG LRAKGFASMS SSTGNENMST GTGTLPPMPP
101: TSSYIGSPVF WIGVGVALSV AFTTVSSMLK RYAMQQAFKS MMTQSAPNSF GSNSPFPFSM PPQASPTAPS TYPYLEPKKD TSPHVSTVDV SANEVEATGT
201: SKEVDVTETP KPSKKFAFVD VSPEELQQKN LQSSPETVDV KHDSTYSESK EDTEEQVPTI STNTESKEDT EEKVPTNGAS FKLNEGAAHG PTESNNSASM
301: LSVETIEKMM EDPAVQKMVY PYLPEEMRNP NSFKWMLQNP MYRQQLQDML NNMGATPDQW DNRMLDHLKN FDLSSPEVRQ QFAQVGMTPE EVVSKIMANP
401: DVAVAFQNPK IQTAIMDCSQ NPLNIVKYQN DKEVMDVFMK ISQIFPQING

Best Arabidopsis Sequence Match ( AT5G16620.1 )
(BLAST)

001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Arabidopsis Description

TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.