Factsheet for GSMUA_Achr11P12640_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16620.1	GSMUA_Achr11P...	AT1G06950.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P16240_001	Banana	nucleus	82.76	82.76
PGSC0003DMT400059853	Potato	nucleus, plastid	62.76	60.07
VIT_18s0041g01360.t01	Wine grape	plastid	62.41	41.51
Solyc11g020300.1.1	Tomato	plastid	62.76	41.08
KRH30716	Soybean	endoplasmic reticulum	59.31	40.09
KRG98060	Soybean	endoplasmic reticulum	58.97	39.58
CDY38098	Canola	plastid	57.24	36.89
AT5G16620.1	Thale cress	plastid	56.55	36.69
CDX85495	Canola	plastid	56.9	36.67
Os04t0439900-01	Rice	plastid	54.14	36.6
Bra008608.1-P	Field mustard	plastid	57.24	36.32
CDX69438	Canola	plastid	57.24	36.32
EES12206	Sorghum	plastid	54.48	36.24
TraesCS2B01G325100.2	Wheat	plastid	52.41	35.76
TraesCS2A01G308600.4	Wheat	plastid	52.07	35.53
TraesCS2D01G306800.1	Wheat	plastid	51.72	35.46
HORVU2Hr1G076790.7	Barley	plastid	51.72	35.21
Zm00001d023857_P001	Maize	plastid	20.69	35.09
CDY49648	Canola	plastid	53.79	34.29
Zm00001d025453_P006	Maize	plastid	53.1	34.22
Bra023577.1-P	Field mustard	plastid	38.28	28.76
Zm00001d003612_P001	Maize	plastid	21.03	20.07

Protein Annotations

EnsemblPlants:GSMUA_Achr11P12640_001	EnsemblPlants:GSMUA_Achr11T12640_001	EnsemblPlantsGene:GSMUA_Achr11G12640_001	Gene3D:1.10.260.100	Gene3D:3.40.190.140	InterPro:IPR038108
InterPro:RPN13_C_sf	InterPro:STI1_HS-bd	SEG:seg	SMART:SM00727	UniParc:UPI0002962DE6	UniProt:M0RRP4
MapMan:23.1.3.3	:	:	:	:	:

Description

translocon Tic40, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G12640_001]

Coordinates

chr11:-:11658503..11672464

Molecular Weight (calculated)

32016.2 Da

IEP (calculated)

4.080

GRAVY (calculated)

-0.719

Length

290 amino acids

Sequence
(BLAST)

001: MDQAAPQGGQ FNNPSFGPGS PFPFPATTTS SPTASTTSPA RVSTQQSVTV DVSATKVEST SQSEVGDETQ LEEEKSKKFA FVDVSPEELL QNDPSNLKES
101: TKASPAETQP VNEIPPNGTV KQDGSASNEQ TQTRDSPSLL SVDALEKMME DPTVQKMVYP YLPEEMRNPE TFNWMMQNPQ FRQQMQDMLN NMGGNNEWDN
201: RLTESLKNFN LSSPEIKQQF EQIGLTPEEV ISKIMANPDV AMAFQNPKVQ AAILDCSQNP LSIAKYQNDK EIMDVFTKIS ELFPGVSGYP

Best Arabidopsis Sequence Match ( AT5G16620.1 )
(BLAST)

001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Arabidopsis Description

TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.