CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 2
nucleus 1
vacuole 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98182
KRH17141
KRH30145
KRH72787

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16620.1	KRG98182	AT1G06950.1	17535810
AT5G16620.1	KRH17141	AT1G06950.1	17535810
AT5G16620.1	KRH30145	AT1G06950.1	17535810
AT5G16620.1	KRH72787	AT1G06950.1	17535810

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98060	Soybean	endoplasmic reticulum	95.57	94.91
PGSC0003DMT400059853	Potato	nucleus, plastid	46.62	66.01
VIT_18s0041g01360.t01	Wine grape	plastid	64.8	63.76
GSMUA_Achr8P16240_001	Banana	nucleus	41.03	60.69
GSMUA_Achr11P...	Banana	plastid	40.09	59.31
Solyc11g020300.1.1	Tomato	plastid	59.91	58.01
CDY38098	Canola	plastid	56.18	53.56
AT5G16620.1	Thale cress	plastid	55.71	53.47
Bra008608.1-P	Field mustard	plastid	56.18	52.74
CDX69438	Canola	plastid	56.18	52.74
CDX85495	Canola	plastid	55.24	52.67
Os04t0439900-01	Rice	plastid	50.82	50.82
CDY49648	Canola	plastid	53.38	50.33
TraesCS2A01G308600.4	Wheat	plastid	48.72	49.18
TraesCS2B01G325100.2	Wheat	plastid	48.72	49.18
HORVU2Hr1G076790.7	Barley	plastid	48.72	49.06
TraesCS2D01G306800.1	Wheat	plastid	48.25	48.94
Zm00001d025453_P006	Maize	plastid	50.12	47.78
EES12206	Sorghum	plastid	48.25	47.48
Bra023577.1-P	Field mustard	plastid	41.96	46.63
Zm00001d023857_P001	Maize	plastid	15.62	39.18
Zm00001d003612_P001	Maize	plastid	27.04	38.16

Protein Annotations

EMBL:ACUP02007061	EnsemblPlants:KRH30716	EnsemblPlantsGene:GLYMA_11G202700	EntrezGene:100781154	Gene3D:1.10.260.100	InterPro:STI1_HS-bd
PANTHER:PTHR22904	PANTHER:PTHR22904:SF490	ProteinID:KRH30716	ProteinID:KRH30716.1	SEG:seg	SMART:SM00727
UniParc:UPI000233CE34	UniProt:I1LM14	MapMan:23.1.3.3	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:28337064..28345043

Molecular Weight (calculated)

47125.0 Da

IEP (calculated)

6.806

GRAVY (calculated)

-0.423

Length

429 amino acids

Sequence
(BLAST)

001: MEKLNLALVS SPKPLMLGHV PARDVFRRKH FSFGRVLIAP HRCRFRVSAL SSSHHNPKSV QEKLIVKHFA SISSSNTQET TSIGVKPQLS PSPSSTIGSP
101: LFWIGVGVGL SALFSVVASR LKKYAMQQAF KTMMGQMNSQ NNQFGNAAFS PGSPFPFPMP TAAGPTAPAS SATTQSRAPS ASSASQSTIT VDLPAAKVEA
201: APTTNVKDEV ELKNEPKKIA FVDVSPEETV RESPFESFKD DESSSVKEAW VPDEVSQNGA PSNLGFGDFP GSQSTKKSAL SVDALEKMME DPTVQKMVYP
301: YLPEEMRNPT TFKWMLQNPQ YRQQLEEMLN NMGGSTEWDN RMMDTLKNFD LNSPEVKQQF DQIGLSPEEV ISKIMANPEV AMAFQNPRVQ AAIMDCSQNP
401: MNITKYQNDK EVMDVFNKIS ELFPGVGSP

Best Arabidopsis Sequence Match ( AT5G16620.1 )
(BLAST)

001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Arabidopsis Description

TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.