Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d004430_P001 | |
| Zm00001d032615_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G16620.1 | Zm00001d004430_P001 | AT1G06950.1 | 17535810 |
| AT5G16620.1 | Zm00001d032615_P002 | AT1G06950.1 | 17535810 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d003612_P001 | Maize | plastid | 93.57 | 52.63 |
| EES12206 | Sorghum | plastid | 88.3 | 34.63 |
| Zm00001d025453_P006 | Maize | plastid | 81.29 | 30.89 |
| Os04t0439900-01 | Rice | plastid | 73.68 | 29.37 |
| TraesCS2B01G325100.2 | Wheat | plastid | 70.18 | 28.24 |
| TraesCS2A01G308600.4 | Wheat | plastid | 70.18 | 28.24 |
| TraesCS2D01G306800.1 | Wheat | plastid | 69.59 | 28.13 |
| HORVU2Hr1G076790.7 | Barley | plastid | 67.84 | 27.23 |
| GSMUA_Achr11P... | Banana | plastid | 35.09 | 20.69 |
| GSMUA_Achr8P16240_001 | Banana | nucleus | 33.92 | 20.0 |
| PGSC0003DMT400059853 | Potato | nucleus, plastid | 32.16 | 18.15 |
| KRH30716 | Soybean | endoplasmic reticulum | 39.18 | 15.62 |
| KRG98060 | Soybean | endoplasmic reticulum | 38.6 | 15.28 |
| CDX85495 | Canola | plastid | 36.26 | 13.78 |
| CDY38098 | Canola | plastid | 35.09 | 13.33 |
| AT5G16620.1 | Thale cress | plastid | 34.5 | 13.2 |
| CDX69438 | Canola | plastid | 35.09 | 13.13 |
| Bra008608.1-P | Field mustard | plastid | 35.09 | 13.13 |
| VIT_18s0041g01360.t01 | Wine grape | plastid | 33.33 | 13.07 |
| Solyc11g020300.1.1 | Tomato | plastid | 33.33 | 12.87 |
| CDY49648 | Canola | plastid | 33.33 | 12.53 |
| Bra023577.1-P | Field mustard | plastid | 25.15 | 11.14 |
Protein Annotations
| EnsemblPlants:Zm00001d023857_P001 | EnsemblPlants:Zm00001d023857_T001 | EnsemblPlantsGene:Zm00001d023857 | ProteinID:AQK40237.1 | SEG:seg | UniParc:UPI00022105D2 |
| UniProt:A0A1D6IWC3 | MapMan:35.2 | : | : | : | : |
Description
Protein TIC 40 chloroplastic
Coordinates
chr10:-:25235894..25236857
Molecular Weight (calculated)
18673.6 Da
IEP (calculated)
4.183
GRAVY (calculated)
-0.709
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQAFKSMMT QAPPNSFGSN SSFPFGMPQQ AYPTAPSSFS YLELKKDTSP QVSTVDVSAT EVDAAGTSKE VDVTETPKPS KKFAFVDVSP EDLRQKDLQS
101: SLEMVDVKHD STESETKEDT EEKAPTNGVT FKLNEDAARG PTESSQSGPM LSVETIEKMM EDPAVQKMVY P
101: SLEMVDVKHD STESETKEDT EEKAPTNGVT FKLNEDAARG PTESSQSGPM LSVETIEKMM EDPAVQKMVY P
001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG
Arabidopsis Description
TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.