Factsheet for PGSC0003DMT400059853

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g020300.1.1	Tomato	plastid	95.05	65.01
GSMUA_Achr11P...	Banana	plastid	60.07	62.76
GSMUA_Achr8P16240_001	Banana	nucleus	58.75	61.38
VIT_18s0041g01360.t01	Wine grape	plastid	69.64	48.39
KRH30716	Soybean	endoplasmic reticulum	66.01	46.62
KRG98060	Soybean	endoplasmic reticulum	65.68	46.06
AT5G16620.1	Thale cress	plastid	61.39	41.61
CDX85495	Canola	plastid	60.4	40.67
Bra008608.1-P	Field mustard	plastid	60.4	40.04
CDX69438	Canola	plastid	60.4	40.04
CDY38098	Canola	plastid	59.08	39.78
CDY49648	Canola	plastid	56.77	37.8
Os04t0439900-01	Rice	plastid	53.14	37.53
TraesCS2B01G325100.2	Wheat	plastid	51.16	36.47
TraesCS2D01G306800.1	Wheat	plastid	50.83	36.41
EES12206	Sorghum	plastid	52.15	36.24
TraesCS2A01G308600.4	Wheat	plastid	50.83	36.24
HORVU2Hr1G076790.7	Barley	plastid	50.83	36.15
Zm00001d025453_P006	Maize	plastid	51.49	34.67
Bra023577.1-P	Field mustard	plastid	41.25	32.38
Zm00001d023857_P001	Maize	plastid	18.15	32.16
Zm00001d003612_P001	Maize	plastid	19.14	19.08

Protein Annotations

Gene3D:1.10.260.100	MapMan:23.1.3.3	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009658	GO:GO:0009706	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0045037	UniProt:M1C4U3	EnsemblPlantsGene:PGSC0003DMG400023281	PGSC:PGSC0003DMG400023281	EnsemblPlants:PGSC0003DMT400059853	SMART:SM00727
InterPro:STI1_HS-bd	UniParc:UPI000294A318	SEG:seg	:	:	:

Description

Plastid Tic40 [Source:PGSC_GENE;Acc:PGSC0003DMG400023281]

Coordinates

chr11:-:13390446..13398360

Molecular Weight (calculated)

32942.4 Da

IEP (calculated)

4.186

GRAVY (calculated)

-0.635

Length

303 amino acids

Sequence
(BLAST)

001: MGQMNGQNSQ FSNNAFSPGP GSPFPFPFPP PPVSGPASSS PPPPTASTSS TPSASFASQP VTVDVSATKV EEPPTVNVKN DTEAGKEPKK NAFVDISPDE
101: TFQKGAFENF KDSTETASVT VDQVTQNGAA SQLGFGPNTS DSTSSTGKSN PLMSVDALEK MMEDPTVQKM VYPYLPEEMR NPTTFKWMLQ NPQYRQQLQD
201: MMNNMGGNPE WDNRMMDSLK NFDLSSPEIK QQFDQIGLTP EEVISKIMAN PDVAMAFQNP RVQAAIMDCS QNPLSIAKYQ NDKEVMDVFN KISELFPGVS
301: GSP

Best Arabidopsis Sequence Match ( AT5G16620.1 )
(BLAST)

001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG

Arabidopsis Description

TIC40TIC40 [Source:UniProtKB/TrEMBL;Acc:A0A178UEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.